miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19111 5' -57.8 NC_004684.1 + 16812 0.66 0.612887
Target:  5'- -gCGCGCCAUucgCGCCAGguUCAaagcgGGUCg -3'
miRNA:   3'- agGCGUGGUA---GUGGUCguGGUg----CCAG- -5'
19111 5' -57.8 NC_004684.1 + 7725 0.66 0.602187
Target:  5'- gCCGUgaGCCAccugaucgguaUCGCC-GCGCCGCuGUCg -3'
miRNA:   3'- aGGCG--UGGU-----------AGUGGuCGUGGUGcCAG- -5'
19111 5' -57.8 NC_004684.1 + 45714 0.66 0.602187
Target:  5'- gUCGCA-CAUCGggaagUCGGCACCuuCGGUCa -3'
miRNA:   3'- aGGCGUgGUAGU-----GGUCGUGGu-GCCAG- -5'
19111 5' -57.8 NC_004684.1 + 56499 0.66 0.612887
Target:  5'- -aCGCGCCgacccgggugGUCACCGGCGUCGgugaGGUCg -3'
miRNA:   3'- agGCGUGG----------UAGUGGUCGUGGUg---CCAG- -5'
19111 5' -57.8 NC_004684.1 + 27268 0.66 0.59151
Target:  5'- gUCgGUGCCGaggcCGCCAGCGCCcgcuACGGcCa -3'
miRNA:   3'- -AGgCGUGGUa---GUGGUCGUGG----UGCCaG- -5'
19111 5' -57.8 NC_004684.1 + 26408 0.66 0.623604
Target:  5'- gCCGcCACCGgcgCGCUGGCAgCGgGGUUc -3'
miRNA:   3'- aGGC-GUGGUa--GUGGUCGUgGUgCCAG- -5'
19111 5' -57.8 NC_004684.1 + 22543 0.66 0.634328
Target:  5'- cUCUGC-CCGguguguUCGCCGGUaucGCCAcauCGGUCg -3'
miRNA:   3'- -AGGCGuGGU------AGUGGUCG---UGGU---GCCAG- -5'
19111 5' -57.8 NC_004684.1 + 52637 0.66 0.612887
Target:  5'- -aCGuCGCCAUCACCGGCAugcuugcgcucCCA-GGUg -3'
miRNA:   3'- agGC-GUGGUAGUGGUCGU-----------GGUgCCAg -5'
19111 5' -57.8 NC_004684.1 + 4761 0.66 0.612887
Target:  5'- gCCGCgACCugAUCA--AGCGCCACGGcUCc -3'
miRNA:   3'- aGGCG-UGG--UAGUggUCGUGGUGCC-AG- -5'
19111 5' -57.8 NC_004684.1 + 49137 0.66 0.609675
Target:  5'- -aCGUACCGUCGCCggucucgcacaccgGGCAgUACGG-Cg -3'
miRNA:   3'- agGCGUGGUAGUGG--------------UCGUgGUGCCaG- -5'
19111 5' -57.8 NC_004684.1 + 17629 0.66 0.602187
Target:  5'- cCCGUACUggCGCuCAGCGCCuuGG-Ca -3'
miRNA:   3'- aGGCGUGGuaGUG-GUCGUGGugCCaG- -5'
19111 5' -57.8 NC_004684.1 + 49794 0.66 0.59151
Target:  5'- gCCGCACCAcagaCACUAGauuCCAgCGGUg -3'
miRNA:   3'- aGGCGUGGUa---GUGGUCgu-GGU-GCCAg -5'
19111 5' -57.8 NC_004684.1 + 24515 0.66 0.643978
Target:  5'- gCCGCGCguUCGgCGGUGCCaucuacgGCGGUg -3'
miRNA:   3'- aGGCGUGguAGUgGUCGUGG-------UGCCAg -5'
19111 5' -57.8 NC_004684.1 + 39969 0.66 0.602187
Target:  5'- --aGCGCCAUCcCCugcgcuccgGGCACC-UGGUCg -3'
miRNA:   3'- aggCGUGGUAGuGG---------UCGUGGuGCCAG- -5'
19111 5' -57.8 NC_004684.1 + 51957 0.66 0.602187
Target:  5'- --aGCACCGgcuCCAGCagcagggugGCCACGGUg -3'
miRNA:   3'- aggCGUGGUaguGGUCG---------UGGUGCCAg -5'
19111 5' -57.8 NC_004684.1 + 55309 0.66 0.59151
Target:  5'- gCCGCGCgG--GCCAGCACCucgucgcgcucgGCGGcCa -3'
miRNA:   3'- aGGCGUGgUagUGGUCGUGG------------UGCCaG- -5'
19111 5' -57.8 NC_004684.1 + 17266 0.66 0.645049
Target:  5'- cCCGCcgaucaaccugGCCAUCgagguggggGCCAGcCGCC-UGGUCg -3'
miRNA:   3'- aGGCG-----------UGGUAG---------UGGUC-GUGGuGCCAG- -5'
19111 5' -57.8 NC_004684.1 + 1619 0.66 0.623604
Target:  5'- uUCCgGCACCugCACCGGCGCaacCGGg- -3'
miRNA:   3'- -AGG-CGUGGuaGUGGUCGUGgu-GCCag -5'
19111 5' -57.8 NC_004684.1 + 61781 0.66 0.602187
Target:  5'- cUCCaGCACCAUgcgCGCCAGCucgGCCccgucggcagGCgGGUCg -3'
miRNA:   3'- -AGG-CGUGGUA---GUGGUCG---UGG----------UG-CCAG- -5'
19111 5' -57.8 NC_004684.1 + 17709 0.66 0.623604
Target:  5'- cUCCGCGCCAcCAagaUCAacaACUGCGGUCg -3'
miRNA:   3'- -AGGCGUGGUaGU---GGUcg-UGGUGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.