miRNA display CGI


Results 21 - 40 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 5' -57 NC_004684.1 + 37322 0.66 0.709939
Target:  5'- gGCCaUUGCCU---ACCUGGAaagcCCGCCg -3'
miRNA:   3'- gCGGcAAUGGGccaUGGACCU----GGUGG- -5'
19112 5' -57 NC_004684.1 + 1149 0.66 0.708906
Target:  5'- uGCCGggcgUGCCgaccgugcacuuUGGUGCCgagccgcaggcgcUGGACUACUa -3'
miRNA:   3'- gCGGCa---AUGG------------GCCAUGG-------------ACCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 28537 0.66 0.708906
Target:  5'- cCGCgCGUaa-UCGGUguugagcGCCaGGGCCACCa -3'
miRNA:   3'- -GCG-GCAaugGGCCA-------UGGaCCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 12531 0.66 0.706836
Target:  5'- aCGaCCGUggcagcaaacGCCUGGUugCUGccagcgugcucguuGACCGCCc -3'
miRNA:   3'- -GC-GGCAa---------UGGGCCAugGAC--------------CUGGUGG- -5'
19112 5' -57 NC_004684.1 + 4479 0.66 0.703726
Target:  5'- cCGUCGUUGgCCGcUACCguaaccccgccgagcUGGcgGCCACCg -3'
miRNA:   3'- -GCGGCAAUgGGCcAUGG---------------ACC--UGGUGG- -5'
19112 5' -57 NC_004684.1 + 23558 0.66 0.699571
Target:  5'- gGUCGcgGCCUGGacaGCCUgccGGGCCGCg -3'
miRNA:   3'- gCGGCaaUGGGCCa--UGGA---CCUGGUGg -5'
19112 5' -57 NC_004684.1 + 64194 0.66 0.699571
Target:  5'- uCGgCGUUGCCgGuGUGCC-GGAUcgaCACCu -3'
miRNA:   3'- -GCgGCAAUGGgC-CAUGGaCCUG---GUGG- -5'
19112 5' -57 NC_004684.1 + 15658 0.66 0.699571
Target:  5'- aCGCCGcauuccugGCCCaGUacgACCUGGAaggcggCACCg -3'
miRNA:   3'- -GCGGCaa------UGGGcCA---UGGACCUg-----GUGG- -5'
19112 5' -57 NC_004684.1 + 39948 0.66 0.699571
Target:  5'- uGUgGUUAUggCGGUGCCcGGAgCGCCa -3'
miRNA:   3'- gCGgCAAUGg-GCCAUGGaCCUgGUGG- -5'
19112 5' -57 NC_004684.1 + 20396 0.66 0.699571
Target:  5'- gCGCaCGagGCCgaGGUcaGCCUGGACgACUc -3'
miRNA:   3'- -GCG-GCaaUGGg-CCA--UGGACCUGgUGG- -5'
19112 5' -57 NC_004684.1 + 51467 0.66 0.699571
Target:  5'- cCGCCag-GCuCCGGUGCCgGGuagGCCucuGCCg -3'
miRNA:   3'- -GCGGcaaUG-GGCCAUGGaCC---UGG---UGG- -5'
19112 5' -57 NC_004684.1 + 24889 0.66 0.699571
Target:  5'- gCGCCGUUgaucgcguugGCCUGGUcgUUGGACaggauGCCg -3'
miRNA:   3'- -GCGGCAA----------UGGGCCAugGACCUGg----UGG- -5'
19112 5' -57 NC_004684.1 + 4465 0.66 0.698531
Target:  5'- gCGCUGgucgGCuucgucaCCGGccaggGCCUGGcCCGCCg -3'
miRNA:   3'- -GCGGCaa--UG-------GGCCa----UGGACCuGGUGG- -5'
19112 5' -57 NC_004684.1 + 45223 0.66 0.696448
Target:  5'- cCGCCGUgGCCCugcGGUGCUccucggugaugccaUGGauGCCGCg -3'
miRNA:   3'- -GCGGCAaUGGG---CCAUGG--------------ACC--UGGUGg -5'
19112 5' -57 NC_004684.1 + 27310 0.66 0.689142
Target:  5'- gGCCGc--UgCGGUAUCUGcGACCGCa -3'
miRNA:   3'- gCGGCaauGgGCCAUGGAC-CUGGUGg -5'
19112 5' -57 NC_004684.1 + 61702 0.66 0.689142
Target:  5'- uGCCGUgggcaGgCCGGgcCCcGG-CCACCu -3'
miRNA:   3'- gCGGCAa----UgGGCCauGGaCCuGGUGG- -5'
19112 5' -57 NC_004684.1 + 59423 0.66 0.689142
Target:  5'- gCGCaCGUgccGCCUGGcgGCCUuGcCCACCg -3'
miRNA:   3'- -GCG-GCAa--UGGGCCa-UGGAcCuGGUGG- -5'
19112 5' -57 NC_004684.1 + 19907 0.66 0.689142
Target:  5'- aCGCCaccaagcuCCUGG-ACCUGGGauaCACCg -3'
miRNA:   3'- -GCGGcaau----GGGCCaUGGACCUg--GUGG- -5'
19112 5' -57 NC_004684.1 + 59339 0.66 0.689142
Target:  5'- aGCCGc-ACCCugcuGGcGCUggaGGACCGCCa -3'
miRNA:   3'- gCGGCaaUGGG----CCaUGGa--CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 17252 0.66 0.689142
Target:  5'- aCGCUGguggagUGCCCGccgaucaACCUGG-CCAUCg -3'
miRNA:   3'- -GCGGCa-----AUGGGCca-----UGGACCuGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.