miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 45544 0.66 0.795743
Target:  5'- aCcgGCGCACCGGGggacAGGUCGg- -3'
miRNA:   3'- gGuaCGCGUGGCUCaagcUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 742 0.66 0.795743
Target:  5'- aCCggGcCGcCGCCGAGgccaUCGuGGCCAc- -3'
miRNA:   3'- -GGuaC-GC-GUGGCUCa---AGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 35855 0.66 0.795743
Target:  5'- uCCAguucGCGggcagggaACCGAgGUUCGcgcGGGCCGUGg -3'
miRNA:   3'- -GGUa---CGCg-------UGGCU-CAAGC---UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 66580 0.66 0.795743
Target:  5'- uCCAUGCGgGCCGccacggcgaGGUgcaggUGAgGGCCAUc -3'
miRNA:   3'- -GGUACGCgUGGC---------UCAa----GCU-CCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 5815 0.66 0.789982
Target:  5'- aCGUGcCGCACCgugGAGUacaagcuggcgguguUCGAGGaCCAg- -3'
miRNA:   3'- gGUAC-GCGUGG---CUCA---------------AGCUCC-GGUac -5'
19113 3' -55.2 NC_004684.1 + 60065 0.66 0.786109
Target:  5'- --uUGCaCACCGAGcacgCGucGGCCAUGg -3'
miRNA:   3'- gguACGcGUGGCUCaa--GCu-CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 59451 0.66 0.786109
Target:  5'- aCCgGUGUGCGCCGG--UCGGcGGCgAUGu -3'
miRNA:   3'- -GG-UACGCGUGGCUcaAGCU-CCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 15767 0.66 0.776321
Target:  5'- aCCGaaagGUGCGCCGAG--CGcGGCCAa- -3'
miRNA:   3'- -GGUa---CGCGUGGCUCaaGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 22846 0.66 0.776321
Target:  5'- aCCGgccUGCcgACCGGGUUCGuccGGGCCAc- -3'
miRNA:   3'- -GGU---ACGcgUGGCUCAAGC---UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 43635 0.66 0.776321
Target:  5'- gCCGaGCGCGgUGAGUUCGucGGaCCAa- -3'
miRNA:   3'- -GGUaCGCGUgGCUCAAGCu-CC-GGUac -5'
19113 3' -55.2 NC_004684.1 + 24144 0.66 0.766389
Target:  5'- cCCGcUGCGCACCGcuccggugcagGGUcCGcAGGCgGUGc -3'
miRNA:   3'- -GGU-ACGCGUGGC-----------UCAaGC-UCCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 37174 0.66 0.765388
Target:  5'- gCCAcGuCGCGCCGAGcaUCGAcgcgcgcGGCCAg- -3'
miRNA:   3'- -GGUaC-GCGUGGCUCa-AGCU-------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 58073 0.66 0.756322
Target:  5'- aCCGUGCGCACCGugcAGcUCGAccgggagcGcGCCGa- -3'
miRNA:   3'- -GGUACGCGUGGC---UCaAGCU--------C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 37620 0.66 0.756322
Target:  5'- cCCAUGCcgaaCGCCGucGGUgCGcuGGCCAUGg -3'
miRNA:   3'- -GGUACGc---GUGGC--UCAaGCu-CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 448 0.66 0.756322
Target:  5'- aCCGcUGCGCGCa----UCGuGGCCGUGg -3'
miRNA:   3'- -GGU-ACGCGUGgcucaAGCuCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 34942 0.66 0.756322
Target:  5'- --uUGCcCGCCGAGUUCGAGucgaggugcaucGCCAc- -3'
miRNA:   3'- gguACGcGUGGCUCAAGCUC------------CGGUac -5'
19113 3' -55.2 NC_004684.1 + 23727 0.66 0.756322
Target:  5'- gCCGUGUGgGCUGAGUUCcAGGaCGUu -3'
miRNA:   3'- -GGUACGCgUGGCUCAAGcUCCgGUAc -5'
19113 3' -55.2 NC_004684.1 + 1632 0.66 0.752261
Target:  5'- aCcgGCGCaACCGGGUaccggcgcccaagUGGGGCCAg- -3'
miRNA:   3'- gGuaCGCG-UGGCUCAa------------GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 8037 0.67 0.750223
Target:  5'- aCCGUGCGCguguucaacaccaacGgCCGGG-UCGuGGCCGa- -3'
miRNA:   3'- -GGUACGCG---------------U-GGCUCaAGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 1617 0.67 0.746133
Target:  5'- gCCGUGCGCgcgcccACCGGcGcgCGGcGGCCAa- -3'
miRNA:   3'- -GGUACGCG------UGGCU-CaaGCU-CCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.