miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 2557 0.67 0.704367
Target:  5'- ---aGCGCGCgGAGgccuucgcCGAGGCCGg- -3'
miRNA:   3'- gguaCGCGUGgCUCaa------GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 20348 0.67 0.704367
Target:  5'- gCCcgGUGCACCGucaccgCGcAGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUGGCucaa--GC-UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 33250 0.68 0.650699
Target:  5'- aCCGUGcCGC-CCGAGgcggCGAGGaaCGUGa -3'
miRNA:   3'- -GGUAC-GCGuGGCUCaa--GCUCCg-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 47060 0.68 0.661506
Target:  5'- aCCggGCGaCGCCGAucUCGAuGGCCGc- -3'
miRNA:   3'- -GGuaCGC-GUGGCUcaAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 43645 0.68 0.650699
Target:  5'- cCCGaacUGCGCACCGAGcagugCGccGCCAg- -3'
miRNA:   3'- -GGU---ACGCGUGGCUCaa---GCucCGGUac -5'
19113 3' -55.2 NC_004684.1 + 63361 0.68 0.683031
Target:  5'- cCCA-GCGCACCGAGcggcCGAcGcGCCAg- -3'
miRNA:   3'- -GGUaCGCGUGGCUCaa--GCU-C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 9115 0.68 0.683031
Target:  5'- aCCGUGgGgccauCACCGc---CGAGGCCAUGg -3'
miRNA:   3'- -GGUACgC-----GUGGCucaaGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 2345 0.68 0.672287
Target:  5'- cCCGgacUGcCGCcCUGAGUUCGuGGCCGc- -3'
miRNA:   3'- -GGU---AC-GCGuGGCUCAAGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 4545 0.68 0.661506
Target:  5'- cCCcgGCGCuguggcugauuGCCGAGgccaUCGAGGCg--- -3'
miRNA:   3'- -GGuaCGCG-----------UGGCUCa---AGCUCCGguac -5'
19113 3' -55.2 NC_004684.1 + 55929 0.68 0.650699
Target:  5'- gCCAagGUGgACCGGGg-CGAGGCCGa- -3'
miRNA:   3'- -GGUa-CGCgUGGCUCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 16451 0.68 0.639875
Target:  5'- aCCAUcGUGCGCCu-GgaCGAGGCCGg- -3'
miRNA:   3'- -GGUA-CGCGUGGcuCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 40730 0.69 0.629045
Target:  5'- aCCA-GCGCGgCGGGggCGGuGGCgGUGg -3'
miRNA:   3'- -GGUaCGCGUgGCUCaaGCU-CCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 17016 0.69 0.618217
Target:  5'- aCAUGCGCACCGAG--CGGGugaagaacGCCGc- -3'
miRNA:   3'- gGUACGCGUGGCUCaaGCUC--------CGGUac -5'
19113 3' -55.2 NC_004684.1 + 1059 0.69 0.596605
Target:  5'- cCCcgGCGuCACCGGgacGUUCGAGcGCUAc- -3'
miRNA:   3'- -GGuaCGC-GUGGCU---CAAGCUC-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 3329 0.69 0.575111
Target:  5'- -gGUGCGCAaggcgcucaaCGAgguGUUCGAGGCCGa- -3'
miRNA:   3'- ggUACGCGUg---------GCU---CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 37190 0.69 0.618217
Target:  5'- aCCAUGgacuCGCCGGGUUUGGuGGCCAc- -3'
miRNA:   3'- -GGUACgc--GUGGCUCAAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 28090 0.69 0.596605
Target:  5'- gCCGcGCgacccGCACCGGGUggugcgguUCGAGGCCuUGc -3'
miRNA:   3'- -GGUaCG-----CGUGGCUCA--------AGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 41097 0.7 0.564427
Target:  5'- gCCGagcUGCGUACCGAuGgcCGAGGUCAc- -3'
miRNA:   3'- -GGU---ACGCGUGGCU-CaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 54625 0.7 0.532724
Target:  5'- -uGUGCGCGCgCGAGgaCGGGGUguUGu -3'
miRNA:   3'- ggUACGCGUG-GCUCaaGCUCCGguAC- -5'
19113 3' -55.2 NC_004684.1 + 54360 0.7 0.553797
Target:  5'- -gAUGUuggcaaGUGCCGGGggcggggUCGAGGCCAUGc -3'
miRNA:   3'- ggUACG------CGUGGCUCa------AGCUCCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.