miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 23744 0.71 0.481433
Target:  5'- ---gGCGCACUGcucggugcgcAGUUCG-GGCCGUGg -3'
miRNA:   3'- gguaCGCGUGGC----------UCAAGCuCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 48567 0.71 0.481433
Target:  5'- gCC-UGCGCGCCGAGcUUGAcgauggaguuGGCCAg- -3'
miRNA:   3'- -GGuACGCGUGGCUCaAGCU----------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 17990 0.7 0.522295
Target:  5'- uCCAgguggugGCGCugACCGAGUacggcggcaacaUCGgcaAGGCCAUGg -3'
miRNA:   3'- -GGUa------CGCG--UGGCUCA------------AGC---UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 51454 0.7 0.553797
Target:  5'- cUCAUGCGC-CCG-GUggcCGAGGCCc-- -3'
miRNA:   3'- -GGUACGCGuGGCuCAa--GCUCCGGuac -5'
19113 3' -55.2 NC_004684.1 + 54360 0.7 0.553797
Target:  5'- -gAUGUuggcaaGUGCCGGGggcggggUCGAGGCCAUGc -3'
miRNA:   3'- ggUACG------CGUGGCUCa------AGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 54625 0.7 0.532724
Target:  5'- -uGUGCGCGCgCGAGgaCGGGGUguUGu -3'
miRNA:   3'- ggUACGCGUG-GCUCaaGCUCCGguAC- -5'
19113 3' -55.2 NC_004684.1 + 41097 0.7 0.564427
Target:  5'- gCCGagcUGCGUACCGAuGgcCGAGGUCAc- -3'
miRNA:   3'- -GGU---ACGCGUGGCU-CaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 65210 0.7 0.553797
Target:  5'- gCCGUGCgGCACC----UCGcGGGCCAUGa -3'
miRNA:   3'- -GGUACG-CGUGGcucaAGC-UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 9746 0.7 0.532724
Target:  5'- uCCAUcgaccGCGaCAUCGcGUUCGAGGCCugcGUGg -3'
miRNA:   3'- -GGUA-----CGC-GUGGCuCAAGCUCCGG---UAC- -5'
19113 3' -55.2 NC_004684.1 + 46602 0.7 0.522295
Target:  5'- gCguUGCGUGCCGguGGcUUCGGGGCCAc- -3'
miRNA:   3'- -GguACGCGUGGC--UC-AAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 58404 0.7 0.532724
Target:  5'- aCCGUGCGCagcACCuGGUUCGugauGGCCu-- -3'
miRNA:   3'- -GGUACGCG---UGGcUCAAGCu---CCGGuac -5'
19113 3' -55.2 NC_004684.1 + 17016 0.69 0.618217
Target:  5'- aCAUGCGCACCGAG--CGGGugaagaacGCCGc- -3'
miRNA:   3'- gGUACGCGUGGCUCaaGCUC--------CGGUac -5'
19113 3' -55.2 NC_004684.1 + 1059 0.69 0.596605
Target:  5'- cCCcgGCGuCACCGGgacGUUCGAGcGCUAc- -3'
miRNA:   3'- -GGuaCGC-GUGGCU---CAAGCUC-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 3329 0.69 0.575111
Target:  5'- -gGUGCGCAaggcgcucaaCGAgguGUUCGAGGCCGa- -3'
miRNA:   3'- ggUACGCGUg---------GCU---CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 28090 0.69 0.596605
Target:  5'- gCCGcGCgacccGCACCGGGUggugcgguUCGAGGCCuUGc -3'
miRNA:   3'- -GGUaCG-----CGUGGCUCA--------AGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 40730 0.69 0.629045
Target:  5'- aCCA-GCGCGgCGGGggCGGuGGCgGUGg -3'
miRNA:   3'- -GGUaCGCGUgGCUCaaGCU-CCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 37190 0.69 0.618217
Target:  5'- aCCAUGgacuCGCCGGGUUUGGuGGCCAc- -3'
miRNA:   3'- -GGUACgc--GUGGCUCAAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 63361 0.68 0.683031
Target:  5'- cCCA-GCGCACCGAGcggcCGAcGcGCCAg- -3'
miRNA:   3'- -GGUaCGCGUGGCUCaa--GCU-C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 9115 0.68 0.683031
Target:  5'- aCCGUGgGgccauCACCGc---CGAGGCCAUGg -3'
miRNA:   3'- -GGUACgC-----GUGGCucaaGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 55929 0.68 0.650699
Target:  5'- gCCAagGUGgACCGGGg-CGAGGCCGa- -3'
miRNA:   3'- -GGUa-CGCgUGGCUCaaGCUCCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.