Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 64866 | 0.67 | 0.735832 |
Target: 5'- -gGUGCGCagcguccgcaguGCCGGGcgucgUUGAGGCCGc- -3' miRNA: 3'- ggUACGCG------------UGGCUCa----AGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 10364 | 0.67 | 0.739965 |
Target: 5'- aCAUGCGCgagaucgcgcgcaccGCCGGGUaCcAGGCCGc- -3' miRNA: 3'- gGUACGCG---------------UGGCUCAaGcUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 39049 | 0.67 | 0.72543 |
Target: 5'- uCCAuUGUGCGCCGGGU----GGCCAg- -3' miRNA: 3'- -GGU-ACGCGUGGCUCAagcuCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 22756 | 0.67 | 0.719145 |
Target: 5'- aCC-UGCGCAaaGAgguccagcagaacauGUUCGAGGgCGUGg -3' miRNA: 3'- -GGuACGCGUggCU---------------CAAGCUCCgGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 2932 | 0.67 | 0.714938 |
Target: 5'- -gGUGCcuccgGUGCCGAGcacCGAGGCCAUc -3' miRNA: 3'- ggUACG-----CGUGGCUCaa-GCUCCGGUAc -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 1109 | 0.67 | 0.704367 |
Target: 5'- aCCcgGCGCAacuggcaCGAGauggUCGAcGGCCAc- -3' miRNA: 3'- -GGuaCGCGUg------GCUCa---AGCU-CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 20348 | 0.67 | 0.704367 |
Target: 5'- gCCcgGUGCACCGucaccgCGcAGGCCAc- -3' miRNA: 3'- -GGuaCGCGUGGCucaa--GC-UCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 2557 | 0.67 | 0.704367 |
Target: 5'- ---aGCGCGCgGAGgccuucgcCGAGGCCGg- -3' miRNA: 3'- gguaCGCGUGgCUCaa------GCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 2792 | 0.67 | 0.735832 |
Target: 5'- gCCA-GCGaguUCGAGUUcgcCGAGGCCAa- -3' miRNA: 3'- -GGUaCGCgu-GGCUCAA---GCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 4465 | 0.67 | 0.693728 |
Target: 5'- aCGUGCGCG-CGAGgccgUCGuuGGCCGc- -3' miRNA: 3'- gGUACGCGUgGCUCa---AGCu-CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 5815 | 0.66 | 0.789982 |
Target: 5'- aCGUGcCGCACCgugGAGUacaagcuggcgguguUCGAGGaCCAg- -3' miRNA: 3'- gGUAC-GCGUGG---CUCA---------------AGCUCC-GGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 35855 | 0.66 | 0.795743 |
Target: 5'- uCCAguucGCGggcagggaACCGAgGUUCGcgcGGGCCGUGg -3' miRNA: 3'- -GGUa---CGCg-------UGGCU-CAAGC---UCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 448 | 0.66 | 0.756322 |
Target: 5'- aCCGcUGCGCGCa----UCGuGGCCGUGg -3' miRNA: 3'- -GGU-ACGCGUGgcucaAGCuCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 37620 | 0.66 | 0.756322 |
Target: 5'- cCCAUGCcgaaCGCCGucGGUgCGcuGGCCAUGg -3' miRNA: 3'- -GGUACGc---GUGGC--UCAaGCu-CCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 58073 | 0.66 | 0.756322 |
Target: 5'- aCCGUGCGCACCGugcAGcUCGAccgggagcGcGCCGa- -3' miRNA: 3'- -GGUACGCGUGGC---UCaAGCU--------C-CGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 37174 | 0.66 | 0.765388 |
Target: 5'- gCCAcGuCGCGCCGAGcaUCGAcgcgcgcGGCCAg- -3' miRNA: 3'- -GGUaC-GCGUGGCUCa-AGCU-------CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 24144 | 0.66 | 0.766389 |
Target: 5'- cCCGcUGCGCACCGcuccggugcagGGUcCGcAGGCgGUGc -3' miRNA: 3'- -GGU-ACGCGUGGC-----------UCAaGC-UCCGgUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 43635 | 0.66 | 0.776321 |
Target: 5'- gCCGaGCGCGgUGAGUUCGucGGaCCAa- -3' miRNA: 3'- -GGUaCGCGUgGCUCAAGCu-CC-GGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 59451 | 0.66 | 0.786109 |
Target: 5'- aCCgGUGUGCGCCGG--UCGGcGGCgAUGu -3' miRNA: 3'- -GG-UACGCGUGGCUcaAGCU-CCGgUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 45544 | 0.66 | 0.795743 |
Target: 5'- aCcgGCGCACCGGGggacAGGUCGg- -3' miRNA: 3'- gGuaCGCGUGGCUCaagcUCCGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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