miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 3276 1.11 0.000924
Target:  5'- aCCAUGCGCACCGAGUUCGAGGCCAUGg -3'
miRNA:   3'- -GGUACGCGUGGCUCAAGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 26052 0.8 0.147695
Target:  5'- gCCA-GgGCGgCGAGUUCGAGGCCAa- -3'
miRNA:   3'- -GGUaCgCGUgGCUCAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 58782 0.79 0.16455
Target:  5'- gCcgGUGCACCGGgcuuGUUCGAGGCCAc- -3'
miRNA:   3'- gGuaCGCGUGGCU----CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 29725 0.77 0.208355
Target:  5'- uCCAccugGCGCACCGGG-UCGAugccugaccgggcGGCCAUGg -3'
miRNA:   3'- -GGUa---CGCGUGGCUCaAGCU-------------CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 63169 0.76 0.25021
Target:  5'- aCCAgguUGCGCGCCGGGUcgacUCGAcgcGGCCGa- -3'
miRNA:   3'- -GGU---ACGCGUGGCUCA----AGCU---CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 13525 0.76 0.259241
Target:  5'- cCCGUGCGCcgaCGAGUUCGAggagcugcgccuggcGGCCAUc -3'
miRNA:   3'- -GGUACGCGug-GCUCAAGCU---------------CCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 53730 0.76 0.263192
Target:  5'- gCAUG-GUGCCGGGUUCGAcGGCCAg- -3'
miRNA:   3'- gGUACgCGUGGCUCAAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 36479 0.75 0.305416
Target:  5'- -aGUGCgGCACCGGGUUCGAcaucggcaaGGCCGg- -3'
miRNA:   3'- ggUACG-CGUGGCUCAAGCU---------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 5239 0.74 0.312938
Target:  5'- uCCGcGCGCgGCCGAacaaaagaacaGUUCGAGGCCAc- -3'
miRNA:   3'- -GGUaCGCG-UGGCU-----------CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 64805 0.73 0.369494
Target:  5'- gCCGUugGUGCugUcGAGUUCGuGGGCCAUGg -3'
miRNA:   3'- -GGUA--CGCGugG-CUCAAGC-UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 7335 0.73 0.395785
Target:  5'- gCCGggccGCGCGCCacGAGUgCGAGGCC-UGg -3'
miRNA:   3'- -GGUa---CGCGUGG--CUCAaGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 23221 0.72 0.442186
Target:  5'- ---cGCGCGCCGGGUUCaucGCCGUGc -3'
miRNA:   3'- gguaCGCGUGGCUCAAGcucCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 42299 0.72 0.442186
Target:  5'- cCCAgcagGUGCuuCGGGUuaUCGAGGCCAc- -3'
miRNA:   3'- -GGUa---CGCGugGCUCA--AGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 43685 0.71 0.460609
Target:  5'- ---aGCGCGCCGccgcccaGGUUgGAGGCCAc- -3'
miRNA:   3'- gguaCGCGUGGC-------UCAAgCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 44918 0.71 0.46159
Target:  5'- uCgGUGCGCGCCGGGUagUCGGuGGCgacgcuCAUGa -3'
miRNA:   3'- -GgUACGCGUGGCUCA--AGCU-CCG------GUAC- -5'
19113 3' -55.2 NC_004684.1 + 54318 0.71 0.46159
Target:  5'- aCCGggGCGCACCGAG-UCGAuGCCc-- -3'
miRNA:   3'- -GGUa-CGCGUGGCUCaAGCUcCGGuac -5'
19113 3' -55.2 NC_004684.1 + 370 0.71 0.471459
Target:  5'- gCCAUGCGCgaccugGCCGAGacCGAcGGCCc-- -3'
miRNA:   3'- -GGUACGCG------UGGCUCaaGCU-CCGGuac -5'
19113 3' -55.2 NC_004684.1 + 48567 0.71 0.481433
Target:  5'- gCC-UGCGCGCCGAGcUUGAcgauggaguuGGCCAg- -3'
miRNA:   3'- -GGuACGCGUGGCUCaAGCU----------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 23744 0.71 0.481433
Target:  5'- ---gGCGCACUGcucggugcgcAGUUCG-GGCCGUGg -3'
miRNA:   3'- gguaCGCGUGGC----------UCAAGCuCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 18101 0.71 0.501682
Target:  5'- gCAagGC-CACCGAGcgCGAGGCCGg- -3'
miRNA:   3'- gGUa-CGcGUGGCUCaaGCUCCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.