Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 18101 | 0.71 | 0.501682 |
Target: 5'- gCAagGC-CACCGAGcgCGAGGCCGg- -3' miRNA: 3'- gGUa-CGcGUGGCUCaaGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 29767 | 0.71 | 0.510915 |
Target: 5'- gCCA-GCGCACCGAcggcGUUCGGcaugggcGGCCGg- -3' miRNA: 3'- -GGUaCGCGUGGCU----CAAGCU-------CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 17990 | 0.7 | 0.522295 |
Target: 5'- uCCAgguggugGCGCugACCGAGUacggcggcaacaUCGgcaAGGCCAUGg -3' miRNA: 3'- -GGUa------CGCG--UGGCUCA------------AGC---UCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 46602 | 0.7 | 0.522295 |
Target: 5'- gCguUGCGUGCCGguGGcUUCGGGGCCAc- -3' miRNA: 3'- -GguACGCGUGGC--UC-AAGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 54625 | 0.7 | 0.532724 |
Target: 5'- -uGUGCGCGCgCGAGgaCGGGGUguUGu -3' miRNA: 3'- ggUACGCGUG-GCUCaaGCUCCGguAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 9746 | 0.7 | 0.532724 |
Target: 5'- uCCAUcgaccGCGaCAUCGcGUUCGAGGCCugcGUGg -3' miRNA: 3'- -GGUA-----CGC-GUGGCuCAAGCUCCGG---UAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 58404 | 0.7 | 0.532724 |
Target: 5'- aCCGUGCGCagcACCuGGUUCGugauGGCCu-- -3' miRNA: 3'- -GGUACGCG---UGGcUCAAGCu---CCGGuac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 54360 | 0.7 | 0.553797 |
Target: 5'- -gAUGUuggcaaGUGCCGGGggcggggUCGAGGCCAUGc -3' miRNA: 3'- ggUACG------CGUGGCUCa------AGCUCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 51454 | 0.7 | 0.553797 |
Target: 5'- cUCAUGCGC-CCG-GUggcCGAGGCCc-- -3' miRNA: 3'- -GGUACGCGuGGCuCAa--GCUCCGGuac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 65210 | 0.7 | 0.553797 |
Target: 5'- gCCGUGCgGCACC----UCGcGGGCCAUGa -3' miRNA: 3'- -GGUACG-CGUGGcucaAGC-UCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 41097 | 0.7 | 0.564427 |
Target: 5'- gCCGagcUGCGUACCGAuGgcCGAGGUCAc- -3' miRNA: 3'- -GGU---ACGCGUGGCU-CaaGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 3329 | 0.69 | 0.575111 |
Target: 5'- -gGUGCGCAaggcgcucaaCGAgguGUUCGAGGCCGa- -3' miRNA: 3'- ggUACGCGUg---------GCU---CAAGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 28090 | 0.69 | 0.596605 |
Target: 5'- gCCGcGCgacccGCACCGGGUggugcgguUCGAGGCCuUGc -3' miRNA: 3'- -GGUaCG-----CGUGGCUCA--------AGCUCCGGuAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 1059 | 0.69 | 0.596605 |
Target: 5'- cCCcgGCGuCACCGGgacGUUCGAGcGCUAc- -3' miRNA: 3'- -GGuaCGC-GUGGCU---CAAGCUC-CGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 17016 | 0.69 | 0.618217 |
Target: 5'- aCAUGCGCACCGAG--CGGGugaagaacGCCGc- -3' miRNA: 3'- gGUACGCGUGGCUCaaGCUC--------CGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 37190 | 0.69 | 0.618217 |
Target: 5'- aCCAUGgacuCGCCGGGUUUGGuGGCCAc- -3' miRNA: 3'- -GGUACgc--GUGGCUCAAGCU-CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 40730 | 0.69 | 0.629045 |
Target: 5'- aCCA-GCGCGgCGGGggCGGuGGCgGUGg -3' miRNA: 3'- -GGUaCGCGUgGCUCaaGCU-CCGgUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 16451 | 0.68 | 0.639875 |
Target: 5'- aCCAUcGUGCGCCu-GgaCGAGGCCGg- -3' miRNA: 3'- -GGUA-CGCGUGGcuCaaGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 33250 | 0.68 | 0.650699 |
Target: 5'- aCCGUGcCGC-CCGAGgcggCGAGGaaCGUGa -3' miRNA: 3'- -GGUAC-GCGuGGCUCaa--GCUCCg-GUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 55929 | 0.68 | 0.650699 |
Target: 5'- gCCAagGUGgACCGGGg-CGAGGCCGa- -3' miRNA: 3'- -GGUa-CGCgUGGCUCaaGCUCCGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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