miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 8660 0.67 0.735832
Target:  5'- aUCAUGCGUGCCcGGUgCGGccaggugccuguGGCCGUGc -3'
miRNA:   3'- -GGUACGCGUGGcUCAaGCU------------CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 25705 0.67 0.735832
Target:  5'- gCCGUcGcCGCGCUGGGUguugcCGAGGUCGg- -3'
miRNA:   3'- -GGUA-C-GCGUGGCUCAa----GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 40987 0.67 0.735832
Target:  5'- gCCA-GCGCGCCG-GUggcggCGuuGGCCAg- -3'
miRNA:   3'- -GGUaCGCGUGGCuCAa----GCu-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 64866 0.67 0.735832
Target:  5'- -gGUGCGCagcguccgcaguGCCGGGcgucgUUGAGGCCGc- -3'
miRNA:   3'- ggUACGCG------------UGGCUCa----AGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2792 0.67 0.735832
Target:  5'- gCCA-GCGaguUCGAGUUcgcCGAGGCCAa- -3'
miRNA:   3'- -GGUaCGCgu-GGCUCAA---GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 10364 0.67 0.739965
Target:  5'- aCAUGCGCgagaucgcgcgcaccGCCGGGUaCcAGGCCGc- -3'
miRNA:   3'- gGUACGCG---------------UGGCUCAaGcUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 5402 0.67 0.746133
Target:  5'- -uGUGCGCGgCGGGUgCGGguGGCuCAUGg -3'
miRNA:   3'- ggUACGCGUgGCUCAaGCU--CCG-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 1617 0.67 0.746133
Target:  5'- gCCGUGCGCgcgcccACCGGcGcgCGGcGGCCAa- -3'
miRNA:   3'- -GGUACGCG------UGGCU-CaaGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 66285 0.67 0.746133
Target:  5'- cUCGUGCcaguuGCGCCGGG-UCGcGGCC-UGg -3'
miRNA:   3'- -GGUACG-----CGUGGCUCaAGCuCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 8037 0.67 0.750223
Target:  5'- aCCGUGCGCguguucaacaccaacGgCCGGG-UCGuGGCCGa- -3'
miRNA:   3'- -GGUACGCG---------------U-GGCUCaAGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 1632 0.66 0.752261
Target:  5'- aCcgGCGCaACCGGGUaccggcgcccaagUGGGGCCAg- -3'
miRNA:   3'- gGuaCGCG-UGGCUCAa------------GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 34942 0.66 0.756322
Target:  5'- --uUGCcCGCCGAGUUCGAGucgaggugcaucGCCAc- -3'
miRNA:   3'- gguACGcGUGGCUCAAGCUC------------CGGUac -5'
19113 3' -55.2 NC_004684.1 + 448 0.66 0.756322
Target:  5'- aCCGcUGCGCGCa----UCGuGGCCGUGg -3'
miRNA:   3'- -GGU-ACGCGUGgcucaAGCuCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 37620 0.66 0.756322
Target:  5'- cCCAUGCcgaaCGCCGucGGUgCGcuGGCCAUGg -3'
miRNA:   3'- -GGUACGc---GUGGC--UCAaGCu-CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 58073 0.66 0.756322
Target:  5'- aCCGUGCGCACCGugcAGcUCGAccgggagcGcGCCGa- -3'
miRNA:   3'- -GGUACGCGUGGC---UCaAGCU--------C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 23727 0.66 0.756322
Target:  5'- gCCGUGUGgGCUGAGUUCcAGGaCGUu -3'
miRNA:   3'- -GGUACGCgUGGCUCAAGcUCCgGUAc -5'
19113 3' -55.2 NC_004684.1 + 37174 0.66 0.765388
Target:  5'- gCCAcGuCGCGCCGAGcaUCGAcgcgcgcGGCCAg- -3'
miRNA:   3'- -GGUaC-GCGUGGCUCa-AGCU-------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 24144 0.66 0.766389
Target:  5'- cCCGcUGCGCACCGcuccggugcagGGUcCGcAGGCgGUGc -3'
miRNA:   3'- -GGU-ACGCGUGGC-----------UCAaGC-UCCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 43635 0.66 0.776321
Target:  5'- gCCGaGCGCGgUGAGUUCGucGGaCCAa- -3'
miRNA:   3'- -GGUaCGCGUgGCUCAAGCu-CC-GGUac -5'
19113 3' -55.2 NC_004684.1 + 15767 0.66 0.776321
Target:  5'- aCCGaaagGUGCGCCGAG--CGcGGCCAa- -3'
miRNA:   3'- -GGUa---CGCGUGGCUCaaGCuCCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.