miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 5402 0.67 0.746133
Target:  5'- -uGUGCGCGgCGGGUgCGGguGGCuCAUGg -3'
miRNA:   3'- ggUACGCGUgGCUCAaGCU--CCG-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 66285 0.67 0.746133
Target:  5'- cUCGUGCcaguuGCGCCGGG-UCGcGGCC-UGg -3'
miRNA:   3'- -GGUACG-----CGUGGCUCaAGCuCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 10364 0.67 0.739965
Target:  5'- aCAUGCGCgagaucgcgcgcaccGCCGGGUaCcAGGCCGc- -3'
miRNA:   3'- gGUACGCG---------------UGGCUCAaGcUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2792 0.67 0.735832
Target:  5'- gCCA-GCGaguUCGAGUUcgcCGAGGCCAa- -3'
miRNA:   3'- -GGUaCGCgu-GGCUCAA---GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 40987 0.67 0.735832
Target:  5'- gCCA-GCGCGCCG-GUggcggCGuuGGCCAg- -3'
miRNA:   3'- -GGUaCGCGUGGCuCAa----GCu-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 8660 0.67 0.735832
Target:  5'- aUCAUGCGUGCCcGGUgCGGccaggugccuguGGCCGUGc -3'
miRNA:   3'- -GGUACGCGUGGcUCAaGCU------------CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 25705 0.67 0.735832
Target:  5'- gCCGUcGcCGCGCUGGGUguugcCGAGGUCGg- -3'
miRNA:   3'- -GGUA-C-GCGUGGCUCAa----GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 64866 0.67 0.735832
Target:  5'- -gGUGCGCagcguccgcaguGCCGGGcgucgUUGAGGCCGc- -3'
miRNA:   3'- ggUACGCG------------UGGCUCa----AGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 39049 0.67 0.72543
Target:  5'- uCCAuUGUGCGCCGGGU----GGCCAg- -3'
miRNA:   3'- -GGU-ACGCGUGGCUCAagcuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 4391 0.67 0.72543
Target:  5'- uCC-UGCGCAUCGcGUUCccGGCCAc- -3'
miRNA:   3'- -GGuACGCGUGGCuCAAGcuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 22756 0.67 0.719145
Target:  5'- aCC-UGCGCAaaGAgguccagcagaacauGUUCGAGGgCGUGg -3'
miRNA:   3'- -GGuACGCGUggCU---------------CAAGCUCCgGUAC- -5'
19113 3' -55.2 NC_004684.1 + 1802 0.67 0.714938
Target:  5'- gCCGUGCG-GCUcauGacCGAGGCCAUGg -3'
miRNA:   3'- -GGUACGCgUGGcu-CaaGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 2932 0.67 0.714938
Target:  5'- -gGUGCcuccgGUGCCGAGcacCGAGGCCAUc -3'
miRNA:   3'- ggUACG-----CGUGGCUCaa-GCUCCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 41056 0.67 0.714938
Target:  5'- gCCGaGCGCACCGcGUcggcaaUCGGcGGCCcgGc -3'
miRNA:   3'- -GGUaCGCGUGGCuCA------AGCU-CCGGuaC- -5'
19113 3' -55.2 NC_004684.1 + 51798 0.67 0.704367
Target:  5'- cCCGguaGCGCACCGAGcgCGcccccuucucgcGGGUCAg- -3'
miRNA:   3'- -GGUa--CGCGUGGCUCaaGC------------UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 24993 0.67 0.704367
Target:  5'- gUcgGCGCGuuGGGgucggCGGGGCCGa- -3'
miRNA:   3'- gGuaCGCGUggCUCaa---GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 63209 0.67 0.704367
Target:  5'- aCCAccGCGCccGCCGGGcgCaaccGGGCCAUGa -3'
miRNA:   3'- -GGUa-CGCG--UGGCUCaaGc---UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 2557 0.67 0.704367
Target:  5'- ---aGCGCGCgGAGgccuucgcCGAGGCCGg- -3'
miRNA:   3'- gguaCGCGUGgCUCaa------GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 1109 0.67 0.704367
Target:  5'- aCCcgGCGCAacuggcaCGAGauggUCGAcGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUg------GCUCa---AGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 20348 0.67 0.704367
Target:  5'- gCCcgGUGCACCGucaccgCGcAGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUGGCucaa--GC-UCCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.