miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 370 0.71 0.471459
Target:  5'- gCCAUGCGCgaccugGCCGAGacCGAcGGCCc-- -3'
miRNA:   3'- -GGUACGCG------UGGCUCaaGCU-CCGGuac -5'
19113 3' -55.2 NC_004684.1 + 448 0.66 0.756322
Target:  5'- aCCGcUGCGCGCa----UCGuGGCCGUGg -3'
miRNA:   3'- -GGU-ACGCGUGgcucaAGCuCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 742 0.66 0.795743
Target:  5'- aCCggGcCGcCGCCGAGgccaUCGuGGCCAc- -3'
miRNA:   3'- -GGuaC-GC-GUGGCUCa---AGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 1059 0.69 0.596605
Target:  5'- cCCcgGCGuCACCGGgacGUUCGAGcGCUAc- -3'
miRNA:   3'- -GGuaCGC-GUGGCU---CAAGCUC-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 1109 0.67 0.704367
Target:  5'- aCCcgGCGCAacuggcaCGAGauggUCGAcGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUg------GCUCa---AGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 1617 0.67 0.746133
Target:  5'- gCCGUGCGCgcgcccACCGGcGcgCGGcGGCCAa- -3'
miRNA:   3'- -GGUACGCG------UGGCU-CaaGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 1632 0.66 0.752261
Target:  5'- aCcgGCGCaACCGGGUaccggcgcccaagUGGGGCCAg- -3'
miRNA:   3'- gGuaCGCG-UGGCUCAa------------GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 1802 0.67 0.714938
Target:  5'- gCCGUGCG-GCUcauGacCGAGGCCAUGg -3'
miRNA:   3'- -GGUACGCgUGGcu-CaaGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 2345 0.68 0.672287
Target:  5'- cCCGgacUGcCGCcCUGAGUUCGuGGCCGc- -3'
miRNA:   3'- -GGU---AC-GCGuGGCUCAAGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2557 0.67 0.704367
Target:  5'- ---aGCGCGCgGAGgccuucgcCGAGGCCGg- -3'
miRNA:   3'- gguaCGCGUGgCUCaa------GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2792 0.67 0.735832
Target:  5'- gCCA-GCGaguUCGAGUUcgcCGAGGCCAa- -3'
miRNA:   3'- -GGUaCGCgu-GGCUCAA---GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2932 0.67 0.714938
Target:  5'- -gGUGCcuccgGUGCCGAGcacCGAGGCCAUc -3'
miRNA:   3'- ggUACG-----CGUGGCUCaa-GCUCCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 3276 1.11 0.000924
Target:  5'- aCCAUGCGCACCGAGUUCGAGGCCAUGg -3'
miRNA:   3'- -GGUACGCGUGGCUCAAGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 3329 0.69 0.575111
Target:  5'- -gGUGCGCAaggcgcucaaCGAgguGUUCGAGGCCGa- -3'
miRNA:   3'- ggUACGCGUg---------GCU---CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 4391 0.67 0.72543
Target:  5'- uCC-UGCGCAUCGcGUUCccGGCCAc- -3'
miRNA:   3'- -GGuACGCGUGGCuCAAGcuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 4465 0.67 0.693728
Target:  5'- aCGUGCGCG-CGAGgccgUCGuuGGCCGc- -3'
miRNA:   3'- gGUACGCGUgGCUCa---AGCu-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 4545 0.68 0.661506
Target:  5'- cCCcgGCGCuguggcugauuGCCGAGgccaUCGAGGCg--- -3'
miRNA:   3'- -GGuaCGCG-----------UGGCUCa---AGCUCCGguac -5'
19113 3' -55.2 NC_004684.1 + 5239 0.74 0.312938
Target:  5'- uCCGcGCGCgGCCGAacaaaagaacaGUUCGAGGCCAc- -3'
miRNA:   3'- -GGUaCGCG-UGGCU-----------CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 5402 0.67 0.746133
Target:  5'- -uGUGCGCGgCGGGUgCGGguGGCuCAUGg -3'
miRNA:   3'- ggUACGCGUgGCUCAaGCU--CCG-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 5815 0.66 0.789982
Target:  5'- aCGUGcCGCACCgugGAGUacaagcuggcgguguUCGAGGaCCAg- -3'
miRNA:   3'- gGUAC-GCGUGG---CUCA---------------AGCUCC-GGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.