miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 7335 0.73 0.395785
Target:  5'- gCCGggccGCGCGCCacGAGUgCGAGGCC-UGg -3'
miRNA:   3'- -GGUa---CGCGUGG--CUCAaGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 8037 0.67 0.750223
Target:  5'- aCCGUGCGCguguucaacaccaacGgCCGGG-UCGuGGCCGa- -3'
miRNA:   3'- -GGUACGCG---------------U-GGCUCaAGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 8660 0.67 0.735832
Target:  5'- aUCAUGCGUGCCcGGUgCGGccaggugccuguGGCCGUGc -3'
miRNA:   3'- -GGUACGCGUGGcUCAaGCU------------CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 9115 0.68 0.683031
Target:  5'- aCCGUGgGgccauCACCGc---CGAGGCCAUGg -3'
miRNA:   3'- -GGUACgC-----GUGGCucaaGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 9746 0.7 0.532724
Target:  5'- uCCAUcgaccGCGaCAUCGcGUUCGAGGCCugcGUGg -3'
miRNA:   3'- -GGUA-----CGC-GUGGCuCAAGCUCCGG---UAC- -5'
19113 3' -55.2 NC_004684.1 + 10364 0.67 0.739965
Target:  5'- aCAUGCGCgagaucgcgcgcaccGCCGGGUaCcAGGCCGc- -3'
miRNA:   3'- gGUACGCG---------------UGGCUCAaGcUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 13525 0.76 0.259241
Target:  5'- cCCGUGCGCcgaCGAGUUCGAggagcugcgccuggcGGCCAUc -3'
miRNA:   3'- -GGUACGCGug-GCUCAAGCU---------------CCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 15505 0.71 0.501682
Target:  5'- uCgGUGCcacCACCGAGgcCGAGGCCuUGg -3'
miRNA:   3'- -GgUACGc--GUGGCUCaaGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 15767 0.66 0.776321
Target:  5'- aCCGaaagGUGCGCCGAG--CGcGGCCAa- -3'
miRNA:   3'- -GGUa---CGCGUGGCUCaaGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 16451 0.68 0.639875
Target:  5'- aCCAUcGUGCGCCu-GgaCGAGGCCGg- -3'
miRNA:   3'- -GGUA-CGCGUGGcuCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 17016 0.69 0.618217
Target:  5'- aCAUGCGCACCGAG--CGGGugaagaacGCCGc- -3'
miRNA:   3'- gGUACGCGUGGCUCaaGCUC--------CGGUac -5'
19113 3' -55.2 NC_004684.1 + 17990 0.7 0.522295
Target:  5'- uCCAgguggugGCGCugACCGAGUacggcggcaacaUCGgcaAGGCCAUGg -3'
miRNA:   3'- -GGUa------CGCG--UGGCUCA------------AGC---UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 18101 0.71 0.501682
Target:  5'- gCAagGC-CACCGAGcgCGAGGCCGg- -3'
miRNA:   3'- gGUa-CGcGUGGCUCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 20348 0.67 0.704367
Target:  5'- gCCcgGUGCACCGucaccgCGcAGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUGGCucaa--GC-UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 22756 0.67 0.719145
Target:  5'- aCC-UGCGCAaaGAgguccagcagaacauGUUCGAGGgCGUGg -3'
miRNA:   3'- -GGuACGCGUggCU---------------CAAGCUCCgGUAC- -5'
19113 3' -55.2 NC_004684.1 + 22846 0.66 0.776321
Target:  5'- aCCGgccUGCcgACCGGGUUCGuccGGGCCAc- -3'
miRNA:   3'- -GGU---ACGcgUGGCUCAAGC---UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 23221 0.72 0.442186
Target:  5'- ---cGCGCGCCGGGUUCaucGCCGUGc -3'
miRNA:   3'- gguaCGCGUGGCUCAAGcucCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 23727 0.66 0.756322
Target:  5'- gCCGUGUGgGCUGAGUUCcAGGaCGUu -3'
miRNA:   3'- -GGUACGCgUGGCUCAAGcUCCgGUAc -5'
19113 3' -55.2 NC_004684.1 + 23744 0.71 0.481433
Target:  5'- ---gGCGCACUGcucggugcgcAGUUCG-GGCCGUGg -3'
miRNA:   3'- gguaCGCGUGGC----------UCAAGCuCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 24144 0.66 0.766389
Target:  5'- cCCGcUGCGCACCGcuccggugcagGGUcCGcAGGCgGUGc -3'
miRNA:   3'- -GGU-ACGCGUGGC-----------UCAaGC-UCCGgUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.