miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 24993 0.67 0.704367
Target:  5'- gUcgGCGCGuuGGGgucggCGGGGCCGa- -3'
miRNA:   3'- gGuaCGCGUggCUCaa---GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 25705 0.67 0.735832
Target:  5'- gCCGUcGcCGCGCUGGGUguugcCGAGGUCGg- -3'
miRNA:   3'- -GGUA-C-GCGUGGCUCAa----GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 26052 0.8 0.147695
Target:  5'- gCCA-GgGCGgCGAGUUCGAGGCCAa- -3'
miRNA:   3'- -GGUaCgCGUgGCUCAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 28090 0.69 0.596605
Target:  5'- gCCGcGCgacccGCACCGGGUggugcgguUCGAGGCCuUGc -3'
miRNA:   3'- -GGUaCG-----CGUGGCUCA--------AGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 29725 0.77 0.208355
Target:  5'- uCCAccugGCGCACCGGG-UCGAugccugaccgggcGGCCAUGg -3'
miRNA:   3'- -GGUa---CGCGUGGCUCaAGCU-------------CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 29767 0.71 0.510915
Target:  5'- gCCA-GCGCACCGAcggcGUUCGGcaugggcGGCCGg- -3'
miRNA:   3'- -GGUaCGCGUGGCU----CAAGCU-------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 33250 0.68 0.650699
Target:  5'- aCCGUGcCGC-CCGAGgcggCGAGGaaCGUGa -3'
miRNA:   3'- -GGUAC-GCGuGGCUCaa--GCUCCg-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 34942 0.66 0.756322
Target:  5'- --uUGCcCGCCGAGUUCGAGucgaggugcaucGCCAc- -3'
miRNA:   3'- gguACGcGUGGCUCAAGCUC------------CGGUac -5'
19113 3' -55.2 NC_004684.1 + 35855 0.66 0.795743
Target:  5'- uCCAguucGCGggcagggaACCGAgGUUCGcgcGGGCCGUGg -3'
miRNA:   3'- -GGUa---CGCg-------UGGCU-CAAGC---UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 36479 0.75 0.305416
Target:  5'- -aGUGCgGCACCGGGUUCGAcaucggcaaGGCCGg- -3'
miRNA:   3'- ggUACG-CGUGGCUCAAGCU---------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 37174 0.66 0.765388
Target:  5'- gCCAcGuCGCGCCGAGcaUCGAcgcgcgcGGCCAg- -3'
miRNA:   3'- -GGUaC-GCGUGGCUCa-AGCU-------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 37190 0.69 0.618217
Target:  5'- aCCAUGgacuCGCCGGGUUUGGuGGCCAc- -3'
miRNA:   3'- -GGUACgc--GUGGCUCAAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 37620 0.66 0.756322
Target:  5'- cCCAUGCcgaaCGCCGucGGUgCGcuGGCCAUGg -3'
miRNA:   3'- -GGUACGc---GUGGC--UCAaGCu-CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 39049 0.67 0.72543
Target:  5'- uCCAuUGUGCGCCGGGU----GGCCAg- -3'
miRNA:   3'- -GGU-ACGCGUGGCUCAagcuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 40730 0.69 0.629045
Target:  5'- aCCA-GCGCGgCGGGggCGGuGGCgGUGg -3'
miRNA:   3'- -GGUaCGCGUgGCUCaaGCU-CCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 40987 0.67 0.735832
Target:  5'- gCCA-GCGCGCCG-GUggcggCGuuGGCCAg- -3'
miRNA:   3'- -GGUaCGCGUGGCuCAa----GCu-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 41056 0.67 0.714938
Target:  5'- gCCGaGCGCACCGcGUcggcaaUCGGcGGCCcgGc -3'
miRNA:   3'- -GGUaCGCGUGGCuCA------AGCU-CCGGuaC- -5'
19113 3' -55.2 NC_004684.1 + 41097 0.7 0.564427
Target:  5'- gCCGagcUGCGUACCGAuGgcCGAGGUCAc- -3'
miRNA:   3'- -GGU---ACGCGUGGCU-CaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 42299 0.72 0.442186
Target:  5'- cCCAgcagGUGCuuCGGGUuaUCGAGGCCAc- -3'
miRNA:   3'- -GGUa---CGCGugGCUCA--AGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 43635 0.66 0.776321
Target:  5'- gCCGaGCGCGgUGAGUUCGucGGaCCAa- -3'
miRNA:   3'- -GGUaCGCGUgGCUCAAGCu-CC-GGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.