miRNA display CGI


Results 61 - 80 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 43645 0.68 0.650699
Target:  5'- cCCGaacUGCGCACCGAGcagugCGccGCCAg- -3'
miRNA:   3'- -GGU---ACGCGUGGCUCaa---GCucCGGUac -5'
19113 3' -55.2 NC_004684.1 + 43685 0.71 0.460609
Target:  5'- ---aGCGCGCCGccgcccaGGUUgGAGGCCAc- -3'
miRNA:   3'- gguaCGCGUGGC-------UCAAgCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 44918 0.71 0.46159
Target:  5'- uCgGUGCGCGCCGGGUagUCGGuGGCgacgcuCAUGa -3'
miRNA:   3'- -GgUACGCGUGGCUCA--AGCU-CCG------GUAC- -5'
19113 3' -55.2 NC_004684.1 + 45544 0.66 0.795743
Target:  5'- aCcgGCGCACCGGGggacAGGUCGg- -3'
miRNA:   3'- gGuaCGCGUGGCUCaagcUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 46602 0.7 0.522295
Target:  5'- gCguUGCGUGCCGguGGcUUCGGGGCCAc- -3'
miRNA:   3'- -GguACGCGUGGC--UC-AAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 47060 0.68 0.661506
Target:  5'- aCCggGCGaCGCCGAucUCGAuGGCCGc- -3'
miRNA:   3'- -GGuaCGC-GUGGCUcaAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 48567 0.71 0.481433
Target:  5'- gCC-UGCGCGCCGAGcUUGAcgauggaguuGGCCAg- -3'
miRNA:   3'- -GGuACGCGUGGCUCaAGCU----------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 51454 0.7 0.553797
Target:  5'- cUCAUGCGC-CCG-GUggcCGAGGCCc-- -3'
miRNA:   3'- -GGUACGCGuGGCuCAa--GCUCCGGuac -5'
19113 3' -55.2 NC_004684.1 + 51798 0.67 0.704367
Target:  5'- cCCGguaGCGCACCGAGcgCGcccccuucucgcGGGUCAg- -3'
miRNA:   3'- -GGUa--CGCGUGGCUCaaGC------------UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 53730 0.76 0.263192
Target:  5'- gCAUG-GUGCCGGGUUCGAcGGCCAg- -3'
miRNA:   3'- gGUACgCGUGGCUCAAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 54318 0.71 0.46159
Target:  5'- aCCGggGCGCACCGAG-UCGAuGCCc-- -3'
miRNA:   3'- -GGUa-CGCGUGGCUCaAGCUcCGGuac -5'
19113 3' -55.2 NC_004684.1 + 54360 0.7 0.553797
Target:  5'- -gAUGUuggcaaGUGCCGGGggcggggUCGAGGCCAUGc -3'
miRNA:   3'- ggUACG------CGUGGCUCa------AGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 54625 0.7 0.532724
Target:  5'- -uGUGCGCGCgCGAGgaCGGGGUguUGu -3'
miRNA:   3'- ggUACGCGUG-GCUCaaGCUCCGguAC- -5'
19113 3' -55.2 NC_004684.1 + 55929 0.68 0.650699
Target:  5'- gCCAagGUGgACCGGGg-CGAGGCCGa- -3'
miRNA:   3'- -GGUa-CGCgUGGCUCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 58073 0.66 0.756322
Target:  5'- aCCGUGCGCACCGugcAGcUCGAccgggagcGcGCCGa- -3'
miRNA:   3'- -GGUACGCGUGGC---UCaAGCU--------C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 58404 0.7 0.532724
Target:  5'- aCCGUGCGCagcACCuGGUUCGugauGGCCu-- -3'
miRNA:   3'- -GGUACGCG---UGGcUCAAGCu---CCGGuac -5'
19113 3' -55.2 NC_004684.1 + 58782 0.79 0.16455
Target:  5'- gCcgGUGCACCGGgcuuGUUCGAGGCCAc- -3'
miRNA:   3'- gGuaCGCGUGGCU----CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 59451 0.66 0.786109
Target:  5'- aCCgGUGUGCGCCGG--UCGGcGGCgAUGu -3'
miRNA:   3'- -GG-UACGCGUGGCUcaAGCU-CCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 60065 0.66 0.786109
Target:  5'- --uUGCaCACCGAGcacgCGucGGCCAUGg -3'
miRNA:   3'- gguACGcGUGGCUCaa--GCu-CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 63169 0.76 0.25021
Target:  5'- aCCAgguUGCGCGCCGGGUcgacUCGAcgcGGCCGa- -3'
miRNA:   3'- -GGU---ACGCGUGGCUCA----AGCU---CCGGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.