miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 66580 0.66 0.795743
Target:  5'- uCCAUGCGgGCCGccacggcgaGGUgcaggUGAgGGCCAUc -3'
miRNA:   3'- -GGUACGCgUGGC---------UCAa----GCU-CCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 66285 0.67 0.746133
Target:  5'- cUCGUGCcaguuGCGCCGGG-UCGcGGCC-UGg -3'
miRNA:   3'- -GGUACG-----CGUGGCUCaAGCuCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 66137 0.67 0.693728
Target:  5'- gCCA-GCGCAUCuGGgcCGGGGCCGg- -3'
miRNA:   3'- -GGUaCGCGUGGcUCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 65210 0.7 0.553797
Target:  5'- gCCGUGCgGCACC----UCGcGGGCCAUGa -3'
miRNA:   3'- -GGUACG-CGUGGcucaAGC-UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 64866 0.67 0.735832
Target:  5'- -gGUGCGCagcguccgcaguGCCGGGcgucgUUGAGGCCGc- -3'
miRNA:   3'- ggUACGCG------------UGGCUCa----AGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 64805 0.73 0.369494
Target:  5'- gCCGUugGUGCugUcGAGUUCGuGGGCCAUGg -3'
miRNA:   3'- -GGUA--CGCGugG-CUCAAGC-UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 63361 0.68 0.683031
Target:  5'- cCCA-GCGCACCGAGcggcCGAcGcGCCAg- -3'
miRNA:   3'- -GGUaCGCGUGGCUCaa--GCU-C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 63209 0.67 0.704367
Target:  5'- aCCAccGCGCccGCCGGGcgCaaccGGGCCAUGa -3'
miRNA:   3'- -GGUa-CGCG--UGGCUCaaGc---UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 63169 0.76 0.25021
Target:  5'- aCCAgguUGCGCGCCGGGUcgacUCGAcgcGGCCGa- -3'
miRNA:   3'- -GGU---ACGCGUGGCUCA----AGCU---CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 60065 0.66 0.786109
Target:  5'- --uUGCaCACCGAGcacgCGucGGCCAUGg -3'
miRNA:   3'- gguACGcGUGGCUCaa--GCu-CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 59451 0.66 0.786109
Target:  5'- aCCgGUGUGCGCCGG--UCGGcGGCgAUGu -3'
miRNA:   3'- -GG-UACGCGUGGCUcaAGCU-CCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 58782 0.79 0.16455
Target:  5'- gCcgGUGCACCGGgcuuGUUCGAGGCCAc- -3'
miRNA:   3'- gGuaCGCGUGGCU----CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 58404 0.7 0.532724
Target:  5'- aCCGUGCGCagcACCuGGUUCGugauGGCCu-- -3'
miRNA:   3'- -GGUACGCG---UGGcUCAAGCu---CCGGuac -5'
19113 3' -55.2 NC_004684.1 + 58073 0.66 0.756322
Target:  5'- aCCGUGCGCACCGugcAGcUCGAccgggagcGcGCCGa- -3'
miRNA:   3'- -GGUACGCGUGGC---UCaAGCU--------C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 55929 0.68 0.650699
Target:  5'- gCCAagGUGgACCGGGg-CGAGGCCGa- -3'
miRNA:   3'- -GGUa-CGCgUGGCUCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 54625 0.7 0.532724
Target:  5'- -uGUGCGCGCgCGAGgaCGGGGUguUGu -3'
miRNA:   3'- ggUACGCGUG-GCUCaaGCUCCGguAC- -5'
19113 3' -55.2 NC_004684.1 + 54360 0.7 0.553797
Target:  5'- -gAUGUuggcaaGUGCCGGGggcggggUCGAGGCCAUGc -3'
miRNA:   3'- ggUACG------CGUGGCUCa------AGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 54318 0.71 0.46159
Target:  5'- aCCGggGCGCACCGAG-UCGAuGCCc-- -3'
miRNA:   3'- -GGUa-CGCGUGGCUCaAGCUcCGGuac -5'
19113 3' -55.2 NC_004684.1 + 53730 0.76 0.263192
Target:  5'- gCAUG-GUGCCGGGUUCGAcGGCCAg- -3'
miRNA:   3'- gGUACgCGUGGCUCAAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 51798 0.67 0.704367
Target:  5'- cCCGguaGCGCACCGAGcgCGcccccuucucgcGGGUCAg- -3'
miRNA:   3'- -GGUa--CGCGUGGCUCaaGC------------UCCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.