miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 51454 0.7 0.553797
Target:  5'- cUCAUGCGC-CCG-GUggcCGAGGCCc-- -3'
miRNA:   3'- -GGUACGCGuGGCuCAa--GCUCCGGuac -5'
19113 3' -55.2 NC_004684.1 + 48567 0.71 0.481433
Target:  5'- gCC-UGCGCGCCGAGcUUGAcgauggaguuGGCCAg- -3'
miRNA:   3'- -GGuACGCGUGGCUCaAGCU----------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 47060 0.68 0.661506
Target:  5'- aCCggGCGaCGCCGAucUCGAuGGCCGc- -3'
miRNA:   3'- -GGuaCGC-GUGGCUcaAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 46602 0.7 0.522295
Target:  5'- gCguUGCGUGCCGguGGcUUCGGGGCCAc- -3'
miRNA:   3'- -GguACGCGUGGC--UC-AAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 45544 0.66 0.795743
Target:  5'- aCcgGCGCACCGGGggacAGGUCGg- -3'
miRNA:   3'- gGuaCGCGUGGCUCaagcUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 44918 0.71 0.46159
Target:  5'- uCgGUGCGCGCCGGGUagUCGGuGGCgacgcuCAUGa -3'
miRNA:   3'- -GgUACGCGUGGCUCA--AGCU-CCG------GUAC- -5'
19113 3' -55.2 NC_004684.1 + 43685 0.71 0.460609
Target:  5'- ---aGCGCGCCGccgcccaGGUUgGAGGCCAc- -3'
miRNA:   3'- gguaCGCGUGGC-------UCAAgCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 43645 0.68 0.650699
Target:  5'- cCCGaacUGCGCACCGAGcagugCGccGCCAg- -3'
miRNA:   3'- -GGU---ACGCGUGGCUCaa---GCucCGGUac -5'
19113 3' -55.2 NC_004684.1 + 43635 0.66 0.776321
Target:  5'- gCCGaGCGCGgUGAGUUCGucGGaCCAa- -3'
miRNA:   3'- -GGUaCGCGUgGCUCAAGCu-CC-GGUac -5'
19113 3' -55.2 NC_004684.1 + 42299 0.72 0.442186
Target:  5'- cCCAgcagGUGCuuCGGGUuaUCGAGGCCAc- -3'
miRNA:   3'- -GGUa---CGCGugGCUCA--AGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 41097 0.7 0.564427
Target:  5'- gCCGagcUGCGUACCGAuGgcCGAGGUCAc- -3'
miRNA:   3'- -GGU---ACGCGUGGCU-CaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 41056 0.67 0.714938
Target:  5'- gCCGaGCGCACCGcGUcggcaaUCGGcGGCCcgGc -3'
miRNA:   3'- -GGUaCGCGUGGCuCA------AGCU-CCGGuaC- -5'
19113 3' -55.2 NC_004684.1 + 40987 0.67 0.735832
Target:  5'- gCCA-GCGCGCCG-GUggcggCGuuGGCCAg- -3'
miRNA:   3'- -GGUaCGCGUGGCuCAa----GCu-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 40730 0.69 0.629045
Target:  5'- aCCA-GCGCGgCGGGggCGGuGGCgGUGg -3'
miRNA:   3'- -GGUaCGCGUgGCUCaaGCU-CCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 39049 0.67 0.72543
Target:  5'- uCCAuUGUGCGCCGGGU----GGCCAg- -3'
miRNA:   3'- -GGU-ACGCGUGGCUCAagcuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 37620 0.66 0.756322
Target:  5'- cCCAUGCcgaaCGCCGucGGUgCGcuGGCCAUGg -3'
miRNA:   3'- -GGUACGc---GUGGC--UCAaGCu-CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 37190 0.69 0.618217
Target:  5'- aCCAUGgacuCGCCGGGUUUGGuGGCCAc- -3'
miRNA:   3'- -GGUACgc--GUGGCUCAAGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 37174 0.66 0.765388
Target:  5'- gCCAcGuCGCGCCGAGcaUCGAcgcgcgcGGCCAg- -3'
miRNA:   3'- -GGUaC-GCGUGGCUCa-AGCU-------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 36479 0.75 0.305416
Target:  5'- -aGUGCgGCACCGGGUUCGAcaucggcaaGGCCGg- -3'
miRNA:   3'- ggUACG-CGUGGCUCAAGCU---------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 35855 0.66 0.795743
Target:  5'- uCCAguucGCGggcagggaACCGAgGUUCGcgcGGGCCGUGg -3'
miRNA:   3'- -GGUa---CGCg-------UGGCU-CAAGC---UCCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.