miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 34942 0.66 0.756322
Target:  5'- --uUGCcCGCCGAGUUCGAGucgaggugcaucGCCAc- -3'
miRNA:   3'- gguACGcGUGGCUCAAGCUC------------CGGUac -5'
19113 3' -55.2 NC_004684.1 + 33250 0.68 0.650699
Target:  5'- aCCGUGcCGC-CCGAGgcggCGAGGaaCGUGa -3'
miRNA:   3'- -GGUAC-GCGuGGCUCaa--GCUCCg-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 29767 0.71 0.510915
Target:  5'- gCCA-GCGCACCGAcggcGUUCGGcaugggcGGCCGg- -3'
miRNA:   3'- -GGUaCGCGUGGCU----CAAGCU-------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 29725 0.77 0.208355
Target:  5'- uCCAccugGCGCACCGGG-UCGAugccugaccgggcGGCCAUGg -3'
miRNA:   3'- -GGUa---CGCGUGGCUCaAGCU-------------CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 28090 0.69 0.596605
Target:  5'- gCCGcGCgacccGCACCGGGUggugcgguUCGAGGCCuUGc -3'
miRNA:   3'- -GGUaCG-----CGUGGCUCA--------AGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 26052 0.8 0.147695
Target:  5'- gCCA-GgGCGgCGAGUUCGAGGCCAa- -3'
miRNA:   3'- -GGUaCgCGUgGCUCAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 25705 0.67 0.735832
Target:  5'- gCCGUcGcCGCGCUGGGUguugcCGAGGUCGg- -3'
miRNA:   3'- -GGUA-C-GCGUGGCUCAa----GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 24993 0.67 0.704367
Target:  5'- gUcgGCGCGuuGGGgucggCGGGGCCGa- -3'
miRNA:   3'- gGuaCGCGUggCUCaa---GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 24144 0.66 0.766389
Target:  5'- cCCGcUGCGCACCGcuccggugcagGGUcCGcAGGCgGUGc -3'
miRNA:   3'- -GGU-ACGCGUGGC-----------UCAaGC-UCCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 23744 0.71 0.481433
Target:  5'- ---gGCGCACUGcucggugcgcAGUUCG-GGCCGUGg -3'
miRNA:   3'- gguaCGCGUGGC----------UCAAGCuCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 23727 0.66 0.756322
Target:  5'- gCCGUGUGgGCUGAGUUCcAGGaCGUu -3'
miRNA:   3'- -GGUACGCgUGGCUCAAGcUCCgGUAc -5'
19113 3' -55.2 NC_004684.1 + 23221 0.72 0.442186
Target:  5'- ---cGCGCGCCGGGUUCaucGCCGUGc -3'
miRNA:   3'- gguaCGCGUGGCUCAAGcucCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 22846 0.66 0.776321
Target:  5'- aCCGgccUGCcgACCGGGUUCGuccGGGCCAc- -3'
miRNA:   3'- -GGU---ACGcgUGGCUCAAGC---UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 22756 0.67 0.719145
Target:  5'- aCC-UGCGCAaaGAgguccagcagaacauGUUCGAGGgCGUGg -3'
miRNA:   3'- -GGuACGCGUggCU---------------CAAGCUCCgGUAC- -5'
19113 3' -55.2 NC_004684.1 + 20348 0.67 0.704367
Target:  5'- gCCcgGUGCACCGucaccgCGcAGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUGGCucaa--GC-UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 18101 0.71 0.501682
Target:  5'- gCAagGC-CACCGAGcgCGAGGCCGg- -3'
miRNA:   3'- gGUa-CGcGUGGCUCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 17990 0.7 0.522295
Target:  5'- uCCAgguggugGCGCugACCGAGUacggcggcaacaUCGgcaAGGCCAUGg -3'
miRNA:   3'- -GGUa------CGCG--UGGCUCA------------AGC---UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 17016 0.69 0.618217
Target:  5'- aCAUGCGCACCGAG--CGGGugaagaacGCCGc- -3'
miRNA:   3'- gGUACGCGUGGCUCaaGCUC--------CGGUac -5'
19113 3' -55.2 NC_004684.1 + 16451 0.68 0.639875
Target:  5'- aCCAUcGUGCGCCu-GgaCGAGGCCGg- -3'
miRNA:   3'- -GGUA-CGCGUGGcuCaaGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 15767 0.66 0.776321
Target:  5'- aCCGaaagGUGCGCCGAG--CGcGGCCAa- -3'
miRNA:   3'- -GGUa---CGCGUGGCUCaaGCuCCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.