miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 15505 0.71 0.501682
Target:  5'- uCgGUGCcacCACCGAGgcCGAGGCCuUGg -3'
miRNA:   3'- -GgUACGc--GUGGCUCaaGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 13525 0.76 0.259241
Target:  5'- cCCGUGCGCcgaCGAGUUCGAggagcugcgccuggcGGCCAUc -3'
miRNA:   3'- -GGUACGCGug-GCUCAAGCU---------------CCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 10364 0.67 0.739965
Target:  5'- aCAUGCGCgagaucgcgcgcaccGCCGGGUaCcAGGCCGc- -3'
miRNA:   3'- gGUACGCG---------------UGGCUCAaGcUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 9746 0.7 0.532724
Target:  5'- uCCAUcgaccGCGaCAUCGcGUUCGAGGCCugcGUGg -3'
miRNA:   3'- -GGUA-----CGC-GUGGCuCAAGCUCCGG---UAC- -5'
19113 3' -55.2 NC_004684.1 + 9115 0.68 0.683031
Target:  5'- aCCGUGgGgccauCACCGc---CGAGGCCAUGg -3'
miRNA:   3'- -GGUACgC-----GUGGCucaaGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 8660 0.67 0.735832
Target:  5'- aUCAUGCGUGCCcGGUgCGGccaggugccuguGGCCGUGc -3'
miRNA:   3'- -GGUACGCGUGGcUCAaGCU------------CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 8037 0.67 0.750223
Target:  5'- aCCGUGCGCguguucaacaccaacGgCCGGG-UCGuGGCCGa- -3'
miRNA:   3'- -GGUACGCG---------------U-GGCUCaAGCuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 7335 0.73 0.395785
Target:  5'- gCCGggccGCGCGCCacGAGUgCGAGGCC-UGg -3'
miRNA:   3'- -GGUa---CGCGUGG--CUCAaGCUCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 5815 0.66 0.789982
Target:  5'- aCGUGcCGCACCgugGAGUacaagcuggcgguguUCGAGGaCCAg- -3'
miRNA:   3'- gGUAC-GCGUGG---CUCA---------------AGCUCC-GGUac -5'
19113 3' -55.2 NC_004684.1 + 5402 0.67 0.746133
Target:  5'- -uGUGCGCGgCGGGUgCGGguGGCuCAUGg -3'
miRNA:   3'- ggUACGCGUgGCUCAaGCU--CCG-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 5239 0.74 0.312938
Target:  5'- uCCGcGCGCgGCCGAacaaaagaacaGUUCGAGGCCAc- -3'
miRNA:   3'- -GGUaCGCG-UGGCU-----------CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 4545 0.68 0.661506
Target:  5'- cCCcgGCGCuguggcugauuGCCGAGgccaUCGAGGCg--- -3'
miRNA:   3'- -GGuaCGCG-----------UGGCUCa---AGCUCCGguac -5'
19113 3' -55.2 NC_004684.1 + 4465 0.67 0.693728
Target:  5'- aCGUGCGCG-CGAGgccgUCGuuGGCCGc- -3'
miRNA:   3'- gGUACGCGUgGCUCa---AGCu-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 4391 0.67 0.72543
Target:  5'- uCC-UGCGCAUCGcGUUCccGGCCAc- -3'
miRNA:   3'- -GGuACGCGUGGCuCAAGcuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 3329 0.69 0.575111
Target:  5'- -gGUGCGCAaggcgcucaaCGAgguGUUCGAGGCCGa- -3'
miRNA:   3'- ggUACGCGUg---------GCU---CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 3276 1.11 0.000924
Target:  5'- aCCAUGCGCACCGAGUUCGAGGCCAUGg -3'
miRNA:   3'- -GGUACGCGUGGCUCAAGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 2932 0.67 0.714938
Target:  5'- -gGUGCcuccgGUGCCGAGcacCGAGGCCAUc -3'
miRNA:   3'- ggUACG-----CGUGGCUCaa-GCUCCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 2792 0.67 0.735832
Target:  5'- gCCA-GCGaguUCGAGUUcgcCGAGGCCAa- -3'
miRNA:   3'- -GGUaCGCgu-GGCUCAA---GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2557 0.67 0.704367
Target:  5'- ---aGCGCGCgGAGgccuucgcCGAGGCCGg- -3'
miRNA:   3'- gguaCGCGUGgCUCaa------GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2345 0.68 0.672287
Target:  5'- cCCGgacUGcCGCcCUGAGUUCGuGGCCGc- -3'
miRNA:   3'- -GGU---AC-GCGuGGCUCAAGCuCCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.