Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 2345 | 0.68 | 0.672287 |
Target: 5'- cCCGgacUGcCGCcCUGAGUUCGuGGCCGc- -3' miRNA: 3'- -GGU---AC-GCGuGGCUCAAGCuCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 9746 | 0.7 | 0.532724 |
Target: 5'- uCCAUcgaccGCGaCAUCGcGUUCGAGGCCugcGUGg -3' miRNA: 3'- -GGUA-----CGC-GUGGCuCAAGCUCCGG---UAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 54625 | 0.7 | 0.532724 |
Target: 5'- -uGUGCGCGCgCGAGgaCGGGGUguUGu -3' miRNA: 3'- ggUACGCGUG-GCUCaaGCUCCGguAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 54360 | 0.7 | 0.553797 |
Target: 5'- -gAUGUuggcaaGUGCCGGGggcggggUCGAGGCCAUGc -3' miRNA: 3'- ggUACG------CGUGGCUCa------AGCUCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 51454 | 0.7 | 0.553797 |
Target: 5'- cUCAUGCGC-CCG-GUggcCGAGGCCc-- -3' miRNA: 3'- -GGUACGCGuGGCuCAa--GCUCCGGuac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 28090 | 0.69 | 0.596605 |
Target: 5'- gCCGcGCgacccGCACCGGGUggugcgguUCGAGGCCuUGc -3' miRNA: 3'- -GGUaCG-----CGUGGCUCA--------AGCUCCGGuAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 40730 | 0.69 | 0.629045 |
Target: 5'- aCCA-GCGCGgCGGGggCGGuGGCgGUGg -3' miRNA: 3'- -GGUaCGCGUgGCUCaaGCU-CCGgUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 55929 | 0.68 | 0.650699 |
Target: 5'- gCCAagGUGgACCGGGg-CGAGGCCGa- -3' miRNA: 3'- -GGUa-CGCgUGGCUCaaGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 4545 | 0.68 | 0.661506 |
Target: 5'- cCCcgGCGCuguggcugauuGCCGAGgccaUCGAGGCg--- -3' miRNA: 3'- -GGuaCGCG-----------UGGCUCa---AGCUCCGguac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 48567 | 0.71 | 0.481433 |
Target: 5'- gCC-UGCGCGCCGAGcUUGAcgauggaguuGGCCAg- -3' miRNA: 3'- -GGuACGCGUGGCUCaAGCU----------CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 23744 | 0.71 | 0.481433 |
Target: 5'- ---gGCGCACUGcucggugcgcAGUUCG-GGCCGUGg -3' miRNA: 3'- gguaCGCGUGGC----------UCAAGCuCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 370 | 0.71 | 0.471459 |
Target: 5'- gCCAUGCGCgaccugGCCGAGacCGAcGGCCc-- -3' miRNA: 3'- -GGUACGCG------UGGCUCaaGCU-CCGGuac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 63169 | 0.76 | 0.25021 |
Target: 5'- aCCAgguUGCGCGCCGGGUcgacUCGAcgcGGCCGa- -3' miRNA: 3'- -GGU---ACGCGUGGCUCA----AGCU---CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 13525 | 0.76 | 0.259241 |
Target: 5'- cCCGUGCGCcgaCGAGUUCGAggagcugcgccuggcGGCCAUc -3' miRNA: 3'- -GGUACGCGug-GCUCAAGCU---------------CCGGUAc -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 53730 | 0.76 | 0.263192 |
Target: 5'- gCAUG-GUGCCGGGUUCGAcGGCCAg- -3' miRNA: 3'- gGUACgCGUGGCUCAAGCU-CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 36479 | 0.75 | 0.305416 |
Target: 5'- -aGUGCgGCACCGGGUUCGAcaucggcaaGGCCGg- -3' miRNA: 3'- ggUACG-CGUGGCUCAAGCU---------CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 5239 | 0.74 | 0.312938 |
Target: 5'- uCCGcGCGCgGCCGAacaaaagaacaGUUCGAGGCCAc- -3' miRNA: 3'- -GGUaCGCG-UGGCU-----------CAAGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 64805 | 0.73 | 0.369494 |
Target: 5'- gCCGUugGUGCugUcGAGUUCGuGGGCCAUGg -3' miRNA: 3'- -GGUA--CGCGugG-CUCAAGC-UCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 42299 | 0.72 | 0.442186 |
Target: 5'- cCCAgcagGUGCuuCGGGUuaUCGAGGCCAc- -3' miRNA: 3'- -GGUa---CGCGugGCUCA--AGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 44918 | 0.71 | 0.46159 |
Target: 5'- uCgGUGCGCGCCGGGUagUCGGuGGCgacgcuCAUGa -3' miRNA: 3'- -GgUACGCGUGGCUCA--AGCU-CCG------GUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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