Results 41 - 60 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 9746 | 0.7 | 0.532724 |
Target: 5'- uCCAUcgaccGCGaCAUCGcGUUCGAGGCCugcGUGg -3' miRNA: 3'- -GGUA-----CGC-GUGGCuCAAGCUCCGG---UAC- -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 48567 | 0.71 | 0.481433 |
Target: 5'- gCC-UGCGCGCCGAGcUUGAcgauggaguuGGCCAg- -3' miRNA: 3'- -GGuACGCGUGGCUCaAGCU----------CCGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 17990 | 0.7 | 0.522295 |
Target: 5'- uCCAgguggugGCGCugACCGAGUacggcggcaacaUCGgcaAGGCCAUGg -3' miRNA: 3'- -GGUa------CGCG--UGGCUCA------------AGC---UCCGGUAC- -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 46602 | 0.7 | 0.522295 |
Target: 5'- gCguUGCGUGCCGguGGcUUCGGGGCCAc- -3' miRNA: 3'- -GguACGCGUGGC--UC-AAGCUCCGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 58404 | 0.7 | 0.532724 |
Target: 5'- aCCGUGCGCagcACCuGGUUCGugauGGCCu-- -3' miRNA: 3'- -GGUACGCG---UGGcUCAAGCu---CCGGuac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 65210 | 0.7 | 0.553797 |
Target: 5'- gCCGUGCgGCACC----UCGcGGGCCAUGa -3' miRNA: 3'- -GGUACG-CGUGGcucaAGC-UCCGGUAC- -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 41097 | 0.7 | 0.564427 |
Target: 5'- gCCGagcUGCGUACCGAuGgcCGAGGUCAc- -3' miRNA: 3'- -GGU---ACGCGUGGCU-CaaGCUCCGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 3329 | 0.69 | 0.575111 |
Target: 5'- -gGUGCGCAaggcgcucaaCGAgguGUUCGAGGCCGa- -3' miRNA: 3'- ggUACGCGUg---------GCU---CAAGCUCCGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 1059 | 0.69 | 0.596605 |
Target: 5'- cCCcgGCGuCACCGGgacGUUCGAGcGCUAc- -3' miRNA: 3'- -GGuaCGC-GUGGCU---CAAGCUC-CGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 17016 | 0.69 | 0.618217 |
Target: 5'- aCAUGCGCACCGAG--CGGGugaagaacGCCGc- -3' miRNA: 3'- gGUACGCGUGGCUCaaGCUC--------CGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 29767 | 0.71 | 0.510915 |
Target: 5'- gCCA-GCGCACCGAcggcGUUCGGcaugggcGGCCGg- -3' miRNA: 3'- -GGUaCGCGUGGCU----CAAGCU-------CCGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 15505 | 0.71 | 0.501682 |
Target: 5'- uCgGUGCcacCACCGAGgcCGAGGCCuUGg -3' miRNA: 3'- -GgUACGc--GUGGCUCaaGCUCCGGuAC- -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 35855 | 0.66 | 0.795743 |
Target: 5'- uCCAguucGCGggcagggaACCGAgGUUCGcgcGGGCCGUGg -3' miRNA: 3'- -GGUa---CGCg-------UGGCU-CAAGC---UCCGGUAC- -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 58782 | 0.79 | 0.16455 |
Target: 5'- gCcgGUGCACCGGgcuuGUUCGAGGCCAc- -3' miRNA: 3'- gGuaCGCGUGGCU----CAAGCUCCGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 29725 | 0.77 | 0.208355 |
Target: 5'- uCCAccugGCGCACCGGG-UCGAugccugaccgggcGGCCAUGg -3' miRNA: 3'- -GGUa---CGCGUGGCUCaAGCU-------------CCGGUAC- -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 7335 | 0.73 | 0.395785 |
Target: 5'- gCCGggccGCGCGCCacGAGUgCGAGGCC-UGg -3' miRNA: 3'- -GGUa---CGCGUGG--CUCAaGCUCCGGuAC- -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 23221 | 0.72 | 0.442186 |
Target: 5'- ---cGCGCGCCGGGUUCaucGCCGUGc -3' miRNA: 3'- gguaCGCGUGGCUCAAGcucCGGUAC- -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 43685 | 0.71 | 0.460609 |
Target: 5'- ---aGCGCGCCGccgcccaGGUUgGAGGCCAc- -3' miRNA: 3'- gguaCGCGUGGC-------UCAAgCUCCGGUac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 54318 | 0.71 | 0.46159 |
Target: 5'- aCCGggGCGCACCGAG-UCGAuGCCc-- -3' miRNA: 3'- -GGUa-CGCGUGGCUCaAGCUcCGGuac -5' |
|||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 18101 | 0.71 | 0.501682 |
Target: 5'- gCAagGC-CACCGAGcgCGAGGCCGg- -3' miRNA: 3'- gGUa-CGcGUGGCUCaaGCUCCGGUac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home