Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19113 | 3' | -55.2 | NC_004684.1 | + | 16451 | 0.68 | 0.639875 |
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Target: 5'- aCCAUcGUGCGCCu-GgaCGAGGCCGg- -3' miRNA: 3'- -GGUA-CGCGUGGcuCaaGCUCCGGUac -5' |
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| 19113 | 3' | -55.2 | NC_004684.1 | + | 37190 | 0.69 | 0.618217 |
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Target: 5'- aCCAUGgacuCGCCGGGUUUGGuGGCCAc- -3' miRNA: 3'- -GGUACgc--GUGGCUCAAGCU-CCGGUac -5' |
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| 19113 | 3' | -55.2 | NC_004684.1 | + | 17016 | 0.69 | 0.618217 |
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Target: 5'- aCAUGCGCACCGAG--CGGGugaagaacGCCGc- -3' miRNA: 3'- gGUACGCGUGGCUCaaGCUC--------CGGUac -5' |
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| 19113 | 3' | -55.2 | NC_004684.1 | + | 1059 | 0.69 | 0.596605 |
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Target: 5'- cCCcgGCGuCACCGGgacGUUCGAGcGCUAc- -3' miRNA: 3'- -GGuaCGC-GUGGCU---CAAGCUC-CGGUac -5' |
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| 19113 | 3' | -55.2 | NC_004684.1 | + | 3329 | 0.69 | 0.575111 |
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Target: 5'- -gGUGCGCAaggcgcucaaCGAgguGUUCGAGGCCGa- -3' miRNA: 3'- ggUACGCGUg---------GCU---CAAGCUCCGGUac -5' |
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| 19113 | 3' | -55.2 | NC_004684.1 | + | 41097 | 0.7 | 0.564427 |
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Target: 5'- gCCGagcUGCGUACCGAuGgcCGAGGUCAc- -3' miRNA: 3'- -GGU---ACGCGUGGCU-CaaGCUCCGGUac -5' |
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| 19113 | 3' | -55.2 | NC_004684.1 | + | 65210 | 0.7 | 0.553797 |
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Target: 5'- gCCGUGCgGCACC----UCGcGGGCCAUGa -3' miRNA: 3'- -GGUACG-CGUGGcucaAGC-UCCGGUAC- -5' |
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| 19113 | 3' | -55.2 | NC_004684.1 | + | 3276 | 1.11 | 0.000924 |
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Target: 5'- aCCAUGCGCACCGAGUUCGAGGCCAUGg -3' miRNA: 3'- -GGUACGCGUGGCUCAAGCUCCGGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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