Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19113 | 3' | -55.2 | NC_004684.1 | + | 47060 | 0.68 | 0.661506 |
Target: 5'- aCCggGCGaCGCCGAucUCGAuGGCCGc- -3' miRNA: 3'- -GGuaCGC-GUGGCUcaAGCU-CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 16451 | 0.68 | 0.639875 |
Target: 5'- aCCAUcGUGCGCCu-GgaCGAGGCCGg- -3' miRNA: 3'- -GGUA-CGCGUGGcuCaaGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 17990 | 0.7 | 0.522295 |
Target: 5'- uCCAgguggugGCGCugACCGAGUacggcggcaacaUCGgcaAGGCCAUGg -3' miRNA: 3'- -GGUa------CGCG--UGGCUCA------------AGC---UCCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 7335 | 0.73 | 0.395785 |
Target: 5'- gCCGggccGCGCGCCacGAGUgCGAGGCC-UGg -3' miRNA: 3'- -GGUa---CGCGUGG--CUCAaGCUCCGGuAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 5402 | 0.67 | 0.746133 |
Target: 5'- -uGUGCGCGgCGGGUgCGGguGGCuCAUGg -3' miRNA: 3'- ggUACGCGUgGCUCAaGCU--CCG-GUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 41056 | 0.67 | 0.714938 |
Target: 5'- gCCGaGCGCACCGcGUcggcaaUCGGcGGCCcgGc -3' miRNA: 3'- -GGUaCGCGUGGCuCA------AGCU-CCGGuaC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 17016 | 0.69 | 0.618217 |
Target: 5'- aCAUGCGCACCGAG--CGGGugaagaacGCCGc- -3' miRNA: 3'- gGUACGCGUGGCUCaaGCUC--------CGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 29725 | 0.77 | 0.208355 |
Target: 5'- uCCAccugGCGCACCGGG-UCGAugccugaccgggcGGCCAUGg -3' miRNA: 3'- -GGUa---CGCGUGGCUCaAGCU-------------CCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 51798 | 0.67 | 0.704367 |
Target: 5'- cCCGguaGCGCACCGAGcgCGcccccuucucgcGGGUCAg- -3' miRNA: 3'- -GGUa--CGCGUGGCUCaaGC------------UCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 58782 | 0.79 | 0.16455 |
Target: 5'- gCcgGUGCACCGGgcuuGUUCGAGGCCAc- -3' miRNA: 3'- gGuaCGCGUGGCU----CAAGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 37190 | 0.69 | 0.618217 |
Target: 5'- aCCAUGgacuCGCCGGGUUUGGuGGCCAc- -3' miRNA: 3'- -GGUACgc--GUGGCUCAAGCU-CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 66137 | 0.67 | 0.693728 |
Target: 5'- gCCA-GCGCAUCuGGgcCGGGGCCGg- -3' miRNA: 3'- -GGUaCGCGUGGcUCaaGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 41097 | 0.7 | 0.564427 |
Target: 5'- gCCGagcUGCGUACCGAuGgcCGAGGUCAc- -3' miRNA: 3'- -GGU---ACGCGUGGCU-CaaGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 46602 | 0.7 | 0.522295 |
Target: 5'- gCguUGCGUGCCGguGGcUUCGGGGCCAc- -3' miRNA: 3'- -GguACGCGUGGC--UC-AAGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 18101 | 0.71 | 0.501682 |
Target: 5'- gCAagGC-CACCGAGcgCGAGGCCGg- -3' miRNA: 3'- gGUa-CGcGUGGCUCaaGCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 23221 | 0.72 | 0.442186 |
Target: 5'- ---cGCGCGCCGGGUUCaucGCCGUGc -3' miRNA: 3'- gguaCGCGUGGCUCAAGcucCGGUAC- -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 34942 | 0.66 | 0.756322 |
Target: 5'- --uUGCcCGCCGAGUUCGAGucgaggugcaucGCCAc- -3' miRNA: 3'- gguACGcGUGGCUCAAGCUC------------CGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 1617 | 0.67 | 0.746133 |
Target: 5'- gCCGUGCGCgcgcccACCGGcGcgCGGcGGCCAa- -3' miRNA: 3'- -GGUACGCG------UGGCU-CaaGCU-CCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 25705 | 0.67 | 0.735832 |
Target: 5'- gCCGUcGcCGCGCUGGGUguugcCGAGGUCGg- -3' miRNA: 3'- -GGUA-C-GCGUGGCUCAa----GCUCCGGUac -5' |
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19113 | 3' | -55.2 | NC_004684.1 | + | 1802 | 0.67 | 0.714938 |
Target: 5'- gCCGUGCG-GCUcauGacCGAGGCCAUGg -3' miRNA: 3'- -GGUACGCgUGGcu-CaaGCUCCGGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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