miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 33250 0.68 0.650699
Target:  5'- aCCGUGcCGC-CCGAGgcggCGAGGaaCGUGa -3'
miRNA:   3'- -GGUAC-GCGuGGCUCaa--GCUCCg-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 43645 0.68 0.650699
Target:  5'- cCCGaacUGCGCACCGAGcagugCGccGCCAg- -3'
miRNA:   3'- -GGU---ACGCGUGGCUCaa---GCucCGGUac -5'
19113 3' -55.2 NC_004684.1 + 66285 0.67 0.746133
Target:  5'- cUCGUGCcaguuGCGCCGGG-UCGcGGCC-UGg -3'
miRNA:   3'- -GGUACG-----CGUGGCUCaAGCuCCGGuAC- -5'
19113 3' -55.2 NC_004684.1 + 5402 0.67 0.746133
Target:  5'- -uGUGCGCGgCGGGUgCGGguGGCuCAUGg -3'
miRNA:   3'- ggUACGCGUgGCUCAaGCU--CCG-GUAC- -5'
19113 3' -55.2 NC_004684.1 + 35855 0.66 0.795743
Target:  5'- uCCAguucGCGggcagggaACCGAgGUUCGcgcGGGCCGUGg -3'
miRNA:   3'- -GGUa---CGCg-------UGGCU-CAAGC---UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 66580 0.66 0.795743
Target:  5'- uCCAUGCGgGCCGccacggcgaGGUgcaggUGAgGGCCAUc -3'
miRNA:   3'- -GGUACGCgUGGC---------UCAa----GCU-CCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 5239 0.74 0.312938
Target:  5'- uCCGcGCGCgGCCGAacaaaagaacaGUUCGAGGCCAc- -3'
miRNA:   3'- -GGUaCGCG-UGGCU-----------CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2792 0.67 0.735832
Target:  5'- gCCA-GCGaguUCGAGUUcgcCGAGGCCAa- -3'
miRNA:   3'- -GGUaCGCgu-GGCUCAA---GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 13525 0.76 0.259241
Target:  5'- cCCGUGCGCcgaCGAGUUCGAggagcugcgccuggcGGCCAUc -3'
miRNA:   3'- -GGUACGCGug-GCUCAAGCU---------------CCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 64805 0.73 0.369494
Target:  5'- gCCGUugGUGCugUcGAGUUCGuGGGCCAUGg -3'
miRNA:   3'- -GGUA--CGCGugG-CUCAAGC-UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 48567 0.71 0.481433
Target:  5'- gCC-UGCGCGCCGAGcUUGAcgauggaguuGGCCAg- -3'
miRNA:   3'- -GGuACGCGUGGCUCaAGCU----------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 22756 0.67 0.719145
Target:  5'- aCC-UGCGCAaaGAgguccagcagaacauGUUCGAGGgCGUGg -3'
miRNA:   3'- -GGuACGCGUggCU---------------CAAGCUCCgGUAC- -5'
19113 3' -55.2 NC_004684.1 + 2932 0.67 0.714938
Target:  5'- -gGUGCcuccgGUGCCGAGcacCGAGGCCAUc -3'
miRNA:   3'- ggUACG-----CGUGGCUCaa-GCUCCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 1109 0.67 0.704367
Target:  5'- aCCcgGCGCAacuggcaCGAGauggUCGAcGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUg------GCUCa---AGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 20348 0.67 0.704367
Target:  5'- gCCcgGUGCACCGucaccgCGcAGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUGGCucaa--GC-UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2557 0.67 0.704367
Target:  5'- ---aGCGCGCgGAGgccuucgcCGAGGCCGg- -3'
miRNA:   3'- gguaCGCGUGgCUCaa------GCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 4465 0.67 0.693728
Target:  5'- aCGUGCGCG-CGAGgccgUCGuuGGCCGc- -3'
miRNA:   3'- gGUACGCGUgGCUCa---AGCu-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 54360 0.7 0.553797
Target:  5'- -gAUGUuggcaaGUGCCGGGggcggggUCGAGGCCAUGc -3'
miRNA:   3'- ggUACG------CGUGGCUCa------AGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 54625 0.7 0.532724
Target:  5'- -uGUGCGCGCgCGAGgaCGGGGUguUGu -3'
miRNA:   3'- ggUACGCGUG-GCUCaaGCUCCGguAC- -5'
19113 3' -55.2 NC_004684.1 + 9746 0.7 0.532724
Target:  5'- uCCAUcgaccGCGaCAUCGcGUUCGAGGCCugcGUGg -3'
miRNA:   3'- -GGUA-----CGC-GUGGCuCAAGCUCCGG---UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.