miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 3' -55.2 NC_004684.1 + 64805 0.73 0.369494
Target:  5'- gCCGUugGUGCugUcGAGUUCGuGGGCCAUGg -3'
miRNA:   3'- -GGUA--CGCGugG-CUCAAGC-UCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 5239 0.74 0.312938
Target:  5'- uCCGcGCGCgGCCGAacaaaagaacaGUUCGAGGCCAc- -3'
miRNA:   3'- -GGUaCGCG-UGGCU-----------CAAGCUCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 36479 0.75 0.305416
Target:  5'- -aGUGCgGCACCGGGUUCGAcaucggcaaGGCCGg- -3'
miRNA:   3'- ggUACG-CGUGGCUCAAGCU---------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 9115 0.68 0.683031
Target:  5'- aCCGUGgGgccauCACCGc---CGAGGCCAUGg -3'
miRNA:   3'- -GGUACgC-----GUGGCucaaGCUCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 63361 0.68 0.683031
Target:  5'- cCCA-GCGCACCGAGcggcCGAcGcGCCAg- -3'
miRNA:   3'- -GGUaCGCGUGGCUCaa--GCU-C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 4465 0.67 0.693728
Target:  5'- aCGUGCGCG-CGAGgccgUCGuuGGCCGc- -3'
miRNA:   3'- gGUACGCGUgGCUCa---AGCu-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 5815 0.66 0.789982
Target:  5'- aCGUGcCGCACCgugGAGUacaagcuggcgguguUCGAGGaCCAg- -3'
miRNA:   3'- gGUAC-GCGUGG---CUCA---------------AGCUCC-GGUac -5'
19113 3' -55.2 NC_004684.1 + 59451 0.66 0.786109
Target:  5'- aCCgGUGUGCGCCGG--UCGGcGGCgAUGu -3'
miRNA:   3'- -GG-UACGCGUGGCUcaAGCU-CCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 43635 0.66 0.776321
Target:  5'- gCCGaGCGCGgUGAGUUCGucGGaCCAa- -3'
miRNA:   3'- -GGUaCGCGUgGCUCAAGCu-CC-GGUac -5'
19113 3' -55.2 NC_004684.1 + 24144 0.66 0.766389
Target:  5'- cCCGcUGCGCACCGcuccggugcagGGUcCGcAGGCgGUGc -3'
miRNA:   3'- -GGU-ACGCGUGGC-----------UCAaGC-UCCGgUAC- -5'
19113 3' -55.2 NC_004684.1 + 37174 0.66 0.765388
Target:  5'- gCCAcGuCGCGCCGAGcaUCGAcgcgcgcGGCCAg- -3'
miRNA:   3'- -GGUaC-GCGUGGCUCa-AGCU-------CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 58073 0.66 0.756322
Target:  5'- aCCGUGCGCACCGugcAGcUCGAccgggagcGcGCCGa- -3'
miRNA:   3'- -GGUACGCGUGGC---UCaAGCU--------C-CGGUac -5'
19113 3' -55.2 NC_004684.1 + 37620 0.66 0.756322
Target:  5'- cCCAUGCcgaaCGCCGucGGUgCGcuGGCCAUGg -3'
miRNA:   3'- -GGUACGc---GUGGC--UCAaGCu-CCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 448 0.66 0.756322
Target:  5'- aCCGcUGCGCGCa----UCGuGGCCGUGg -3'
miRNA:   3'- -GGU-ACGCGUGgcucaAGCuCCGGUAC- -5'
19113 3' -55.2 NC_004684.1 + 39049 0.67 0.72543
Target:  5'- uCCAuUGUGCGCCGGGU----GGCCAg- -3'
miRNA:   3'- -GGU-ACGCGUGGCUCAagcuCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 22756 0.67 0.719145
Target:  5'- aCC-UGCGCAaaGAgguccagcagaacauGUUCGAGGgCGUGg -3'
miRNA:   3'- -GGuACGCGUggCU---------------CAAGCUCCgGUAC- -5'
19113 3' -55.2 NC_004684.1 + 2932 0.67 0.714938
Target:  5'- -gGUGCcuccgGUGCCGAGcacCGAGGCCAUc -3'
miRNA:   3'- ggUACG-----CGUGGCUCaa-GCUCCGGUAc -5'
19113 3' -55.2 NC_004684.1 + 1109 0.67 0.704367
Target:  5'- aCCcgGCGCAacuggcaCGAGauggUCGAcGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUg------GCUCa---AGCU-CCGGUac -5'
19113 3' -55.2 NC_004684.1 + 20348 0.67 0.704367
Target:  5'- gCCcgGUGCACCGucaccgCGcAGGCCAc- -3'
miRNA:   3'- -GGuaCGCGUGGCucaa--GC-UCCGGUac -5'
19113 3' -55.2 NC_004684.1 + 2557 0.67 0.704367
Target:  5'- ---aGCGCGCgGAGgccuucgcCGAGGCCGg- -3'
miRNA:   3'- gguaCGCGUGgCUCaa------GCUCCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.