miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 5' -57.8 NC_004684.1 + 618 0.66 0.664376
Target:  5'- aAGgGCGGCGAguaccgcgcCGAGgucgccgGGGUgcuguaccgggugguGCGCAAGa -3'
miRNA:   3'- -UCgCGCUGCU---------GCUCa------CCCA---------------CGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 1487 0.66 0.660125
Target:  5'- cGGUGCGGCGGCccuGGUGGccaaccUGCGCGc- -3'
miRNA:   3'- -UCGCGCUGCUGc--UCACCc-----ACGCGUuc -5'
19113 5' -57.8 NC_004684.1 + 21239 0.66 0.649481
Target:  5'- uGGCGUGGCcGCGAgGUGuucGUGCGCcAGg -3'
miRNA:   3'- -UCGCGCUGcUGCU-CACc--CACGCGuUC- -5'
19113 5' -57.8 NC_004684.1 + 64850 0.66 0.649481
Target:  5'- aGGCGgGugGuuguggUGGG-GGGUGCGCGu- -3'
miRNA:   3'- -UCGCgCugCu-----GCUCaCCCACGCGUuc -5'
19113 5' -57.8 NC_004684.1 + 22358 0.66 0.638823
Target:  5'- cGGCgGCGGCGGCGgucgcgcuggcGGUGGacGUGCAGGc -3'
miRNA:   3'- -UCG-CGCUGCUGC-----------UCACCcaCGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 3115 0.66 0.635624
Target:  5'- uGCGCG-CGGucaucucccccguuCGGGUGGuGUGCGCc-- -3'
miRNA:   3'- uCGCGCuGCU--------------GCUCACC-CACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 27006 0.66 0.632425
Target:  5'- gGGCGCGGCGAucaacagccaggcacCGGGUGccGGUG-GCAu- -3'
miRNA:   3'- -UCGCGCUGCU---------------GCUCAC--CCACgCGUuc -5'
19113 5' -57.8 NC_004684.1 + 54631 0.66 0.628159
Target:  5'- cGCGCGAgGACgGGGUGuuGUGgGCGAc -3'
miRNA:   3'- uCGCGCUgCUG-CUCACc-CACgCGUUc -5'
19113 5' -57.8 NC_004684.1 + 9202 0.66 0.628159
Target:  5'- gGGCGCaGugGGCGcGUgaccGGGUGgGCcAGg -3'
miRNA:   3'- -UCGCG-CugCUGCuCA----CCCACgCGuUC- -5'
19113 5' -57.8 NC_004684.1 + 34422 0.66 0.628159
Target:  5'- uGCGUcgaGGCGGCGAGguUGGccaGCGCGAGc -3'
miRNA:   3'- uCGCG---CUGCUGCUC--ACCca-CGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 12077 0.66 0.617498
Target:  5'- gAGCGCGACGAgGuGcUGGcccGCGCGGc -3'
miRNA:   3'- -UCGCGCUGCUgCuC-ACCca-CGCGUUc -5'
19113 5' -57.8 NC_004684.1 + 24768 0.66 0.617498
Target:  5'- cAGCaccgGCGGCGGCGGGgGaGGUGC-CGGGu -3'
miRNA:   3'- -UCG----CGCUGCUGCUCaC-CCACGcGUUC- -5'
19113 5' -57.8 NC_004684.1 + 46378 0.66 0.617498
Target:  5'- uGGCGgGuCaGCGAGcuaUGGGUGCGCc-- -3'
miRNA:   3'- -UCGCgCuGcUGCUC---ACCCACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 16789 0.66 0.606849
Target:  5'- aGGUGCGGCGcguCGuguGGUGGGcGCGCc-- -3'
miRNA:   3'- -UCGCGCUGCu--GC---UCACCCaCGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 62645 0.67 0.596221
Target:  5'- aGGuCGCGGCacuuGCGGcuGUGGccGUGCGCGAGg -3'
miRNA:   3'- -UC-GCGCUGc---UGCU--CACC--CACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 27772 0.67 0.585622
Target:  5'- cGCGCGACccccgccAgGAGUGGGaGCGCu-- -3'
miRNA:   3'- uCGCGCUGc------UgCUCACCCaCGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 7411 0.67 0.564539
Target:  5'- cGGCGCGuGCGGCaAGguccGGGUGCgGCAc- -3'
miRNA:   3'- -UCGCGC-UGCUGcUCa---CCCACG-CGUuc -5'
19113 5' -57.8 NC_004684.1 + 53791 0.67 0.564539
Target:  5'- cGGCGCGGCGcUGGGaucGGGuUGCGCc-- -3'
miRNA:   3'- -UCGCGCUGCuGCUCa--CCC-ACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 2264 0.67 0.561393
Target:  5'- cAGCGCGGCGGCGGGcauugccgccagccUGGGccacGaCGCGGu -3'
miRNA:   3'- -UCGCGCUGCUGCUC--------------ACCCa---C-GCGUUc -5'
19113 5' -57.8 NC_004684.1 + 19957 0.67 0.550942
Target:  5'- gAGCGCG-CGACcaGGUGgugccggagcaccaGGUGCGCAAc -3'
miRNA:   3'- -UCGCGCuGCUGc-UCAC--------------CCACGCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.