Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 5761 | 0.68 | 0.492707 |
Target: 5'- aAGgGUGACG-CG-GUGGG-GCGCAGc -3' miRNA: 3'- -UCgCGCUGCuGCuCACCCaCGCGUUc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 8426 | 0.68 | 0.502733 |
Target: 5'- cAGCGCGGCagcucGGCGGacaGGGcccgGCGCAAGg -3' miRNA: 3'- -UCGCGCUG-----CUGCUca-CCCa---CGCGUUC- -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 43471 | 0.68 | 0.512847 |
Target: 5'- aGGUGCGGCGGCagcaGGUGcGGcggGCGCAGc -3' miRNA: 3'- -UCGCGCUGCUGc---UCAC-CCa--CGCGUUc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 58658 | 0.68 | 0.533317 |
Target: 5'- gGGCGCGGCGGCGAacaucGGGaucaGCGCc-- -3' miRNA: 3'- -UCGCGCUGCUGCUca---CCCa---CGCGuuc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 28249 | 0.67 | 0.543662 |
Target: 5'- cAGCGCGGuggaccCGGCcAGccuGGUGCGCGAGg -3' miRNA: 3'- -UCGCGCU------GCUGcUCac-CCACGCGUUC- -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 26580 | 0.67 | 0.543662 |
Target: 5'- uGGCGCG-CGGCG-GU--GUGCGCGGGu -3' miRNA: 3'- -UCGCGCuGCUGCuCAccCACGCGUUC- -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 63839 | 0.67 | 0.543662 |
Target: 5'- uGGCGCGGCGcACGcugucGGUGccacGUGCGCGGu -3' miRNA: 3'- -UCGCGCUGC-UGC-----UCACc---CACGCGUUc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 56993 | 0.67 | 0.543662 |
Target: 5'- gAGCGCGucaccgccgGgGACGAGcgcgccaucgGGGUGCGCuGGu -3' miRNA: 3'- -UCGCGC---------UgCUGCUCa---------CCCACGCGuUC- -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 19957 | 0.67 | 0.550942 |
Target: 5'- gAGCGCG-CGACcaGGUGgugccggagcaccaGGUGCGCAAc -3' miRNA: 3'- -UCGCGCuGCUGc-UCAC--------------CCACGCGUUc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 2264 | 0.67 | 0.561393 |
Target: 5'- cAGCGCGGCGGCGGGcauugccgccagccUGGGccacGaCGCGGu -3' miRNA: 3'- -UCGCGCUGCUGCUC--------------ACCCa---C-GCGUUc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 7411 | 0.67 | 0.564539 |
Target: 5'- cGGCGCGuGCGGCaAGguccGGGUGCgGCAc- -3' miRNA: 3'- -UCGCGC-UGCUGcUCa---CCCACG-CGUuc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 53791 | 0.67 | 0.564539 |
Target: 5'- cGGCGCGGCGcUGGGaucGGGuUGCGCc-- -3' miRNA: 3'- -UCGCGCUGCuGCUCa--CCC-ACGCGuuc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 27772 | 0.67 | 0.585622 |
Target: 5'- cGCGCGACccccgccAgGAGUGGGaGCGCu-- -3' miRNA: 3'- uCGCGCUGc------UgCUCACCCaCGCGuuc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 62645 | 0.67 | 0.596221 |
Target: 5'- aGGuCGCGGCacuuGCGGcuGUGGccGUGCGCGAGg -3' miRNA: 3'- -UC-GCGCUGc---UGCU--CACC--CACGCGUUC- -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 16789 | 0.66 | 0.606849 |
Target: 5'- aGGUGCGGCGcguCGuguGGUGGGcGCGCc-- -3' miRNA: 3'- -UCGCGCUGCu--GC---UCACCCaCGCGuuc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 24768 | 0.66 | 0.617498 |
Target: 5'- cAGCaccgGCGGCGGCGGGgGaGGUGC-CGGGu -3' miRNA: 3'- -UCG----CGCUGCUGCUCaC-CCACGcGUUC- -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 46378 | 0.66 | 0.617498 |
Target: 5'- uGGCGgGuCaGCGAGcuaUGGGUGCGCc-- -3' miRNA: 3'- -UCGCgCuGcUGCUC---ACCCACGCGuuc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 12077 | 0.66 | 0.617498 |
Target: 5'- gAGCGCGACGAgGuGcUGGcccGCGCGGc -3' miRNA: 3'- -UCGCGCUGCUgCuC-ACCca-CGCGUUc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 54631 | 0.66 | 0.628159 |
Target: 5'- cGCGCGAgGACgGGGUGuuGUGgGCGAc -3' miRNA: 3'- uCGCGCUgCUG-CUCACc-CACgCGUUc -5' |
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19113 | 5' | -57.8 | NC_004684.1 | + | 9202 | 0.66 | 0.628159 |
Target: 5'- gGGCGCaGugGGCGcGUgaccGGGUGgGCcAGg -3' miRNA: 3'- -UCGCG-CugCUGCuCA----CCCACgCGuUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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