miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 5' -57.8 NC_004684.1 + 618 0.66 0.664376
Target:  5'- aAGgGCGGCGAguaccgcgcCGAGgucgccgGGGUgcuguaccgggugguGCGCAAGa -3'
miRNA:   3'- -UCgCGCUGCU---------GCUCa------CCCA---------------CGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 1487 0.66 0.660125
Target:  5'- cGGUGCGGCGGCccuGGUGGccaaccUGCGCGc- -3'
miRNA:   3'- -UCGCGCUGCUGc--UCACCc-----ACGCGUuc -5'
19113 5' -57.8 NC_004684.1 + 2264 0.67 0.561393
Target:  5'- cAGCGCGGCGGCGGGcauugccgccagccUGGGccacGaCGCGGu -3'
miRNA:   3'- -UCGCGCUGCUGCUC--------------ACCCa---C-GCGUUc -5'
19113 5' -57.8 NC_004684.1 + 3115 0.66 0.635624
Target:  5'- uGCGCG-CGGucaucucccccguuCGGGUGGuGUGCGCc-- -3'
miRNA:   3'- uCGCGCuGCU--------------GCUCACC-CACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 3312 1.09 0.000725
Target:  5'- gAGCGCGACGACGAGUGGGUGCGCAAGg -3'
miRNA:   3'- -UCGCGCUGCUGCUCACCCACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 4775 0.71 0.355544
Target:  5'- aAGCGCcACGGCuccgGGGUGCGCGAc -3'
miRNA:   3'- -UCGCGcUGCUGcucaCCCACGCGUUc -5'
19113 5' -57.8 NC_004684.1 + 5030 0.76 0.177262
Target:  5'- -cCGCGACGACGA---GGUGCGCAGGc -3'
miRNA:   3'- ucGCGCUGCUGCUcacCCACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 5317 0.69 0.482773
Target:  5'- cGCGCuGGCGACcgugcagcAGUGGGUgGCGguGGg -3'
miRNA:   3'- uCGCG-CUGCUGc-------UCACCCA-CGCguUC- -5'
19113 5' -57.8 NC_004684.1 + 5761 0.68 0.492707
Target:  5'- aAGgGUGACG-CG-GUGGG-GCGCAGc -3'
miRNA:   3'- -UCgCGCUGCuGCuCACCCaCGCGUUc -5'
19113 5' -57.8 NC_004684.1 + 7230 0.69 0.43372
Target:  5'- gAGCGCGugGAgGuGUGcccGGUGCaccaggaGCAAGg -3'
miRNA:   3'- -UCGCGCugCUgCuCAC---CCACG-------CGUUC- -5'
19113 5' -57.8 NC_004684.1 + 7411 0.67 0.564539
Target:  5'- cGGCGCGuGCGGCaAGguccGGGUGCgGCAc- -3'
miRNA:   3'- -UCGCGC-UGCUGcUCa---CCCACG-CGUuc -5'
19113 5' -57.8 NC_004684.1 + 8426 0.68 0.502733
Target:  5'- cAGCGCGGCagcucGGCGGacaGGGcccgGCGCAAGg -3'
miRNA:   3'- -UCGCGCUG-----CUGCUca-CCCa---CGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 9202 0.66 0.628159
Target:  5'- gGGCGCaGugGGCGcGUgaccGGGUGgGCcAGg -3'
miRNA:   3'- -UCGCG-CugCUGCuCA----CCCACgCGuUC- -5'
19113 5' -57.8 NC_004684.1 + 12077 0.66 0.617498
Target:  5'- gAGCGCGACGAgGuGcUGGcccGCGCGGc -3'
miRNA:   3'- -UCGCGCUGCUgCuC-ACCca-CGCGUUc -5'
19113 5' -57.8 NC_004684.1 + 12157 0.7 0.416198
Target:  5'- aGGaCGUGGCuaauGGCGuGUGGGUGcCGUAAGa -3'
miRNA:   3'- -UC-GCGCUG----CUGCuCACCCAC-GCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 16789 0.66 0.606849
Target:  5'- aGGUGCGGCGcguCGuguGGUGGGcGCGCc-- -3'
miRNA:   3'- -UCGCGCUGCu--GC---UCACCCaCGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 19102 0.7 0.380764
Target:  5'- uGCGCGAaGGCcGGUGGGacgUGCGCAu- -3'
miRNA:   3'- uCGCGCUgCUGcUCACCC---ACGCGUuc -5'
19113 5' -57.8 NC_004684.1 + 19957 0.67 0.550942
Target:  5'- gAGCGCG-CGACcaGGUGgugccggagcaccaGGUGCGCAAc -3'
miRNA:   3'- -UCGCGCuGCUGc-UCAC--------------CCACGCGUUc -5'
19113 5' -57.8 NC_004684.1 + 21239 0.66 0.649481
Target:  5'- uGGCGUGGCcGCGAgGUGuucGUGCGCcAGg -3'
miRNA:   3'- -UCGCGCUGcUGCU-CACc--CACGCGuUC- -5'
19113 5' -57.8 NC_004684.1 + 21967 0.69 0.482773
Target:  5'- gAGCgGCGGCGAcacCGAGgccaagGuGGUGCGcCAGGg -3'
miRNA:   3'- -UCG-CGCUGCU---GCUCa-----C-CCACGC-GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.