Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 22358 | 0.66 | 0.638823 |
Target: 5'- cGGCgGCGGCGGCGgucgcgcuggcGGUGGacGUGCAGGc -3' miRNA: 3'- -UCG-CGCUGCUGC-----------UCACCcaCGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 24768 | 0.66 | 0.617498 |
Target: 5'- cAGCaccgGCGGCGGCGGGgGaGGUGC-CGGGu -3' miRNA: 3'- -UCG----CGCUGCUGCUCaC-CCACGcGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 26580 | 0.67 | 0.543662 |
Target: 5'- uGGCGCG-CGGCG-GU--GUGCGCGGGu -3' miRNA: 3'- -UCGCGCuGCUGCuCAccCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 27006 | 0.66 | 0.632425 |
Target: 5'- gGGCGCGGCGAucaacagccaggcacCGGGUGccGGUG-GCAu- -3' miRNA: 3'- -UCGCGCUGCU---------------GCUCAC--CCACgCGUuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 27772 | 0.67 | 0.585622 |
Target: 5'- cGCGCGACccccgccAgGAGUGGGaGCGCu-- -3' miRNA: 3'- uCGCGCUGc------UgCUCACCCaCGCGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 27989 | 0.69 | 0.463205 |
Target: 5'- gAGUuCGGCGGCGucUGGGUGaUGCAGGu -3' miRNA: 3'- -UCGcGCUGCUGCucACCCAC-GCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 28249 | 0.67 | 0.543662 |
Target: 5'- cAGCGCGGuggaccCGGCcAGccuGGUGCGCGAGg -3' miRNA: 3'- -UCGCGCU------GCUGcUCac-CCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 29187 | 0.69 | 0.482773 |
Target: 5'- cAGC-CGugGACGcAGUGGGUcucgGUGUggGa -3' miRNA: 3'- -UCGcGCugCUGC-UCACCCA----CGCGuuC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 30771 | 0.69 | 0.472938 |
Target: 5'- cGaCGagGugGACGGGUGGGUGCuGCu-- -3' miRNA: 3'- uC-GCg-CugCUGCUCACCCACG-CGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 34422 | 0.66 | 0.628159 |
Target: 5'- uGCGUcgaGGCGGCGAGguUGGccaGCGCGAGc -3' miRNA: 3'- uCGCG---CUGCUGCUC--ACCca-CGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 36086 | 0.7 | 0.425366 |
Target: 5'- gAGcCGCGAUGggaggcaagcGCGcGGUGGGUGCGCc-- -3' miRNA: 3'- -UC-GCGCUGC----------UGC-UCACCCACGCGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 41696 | 0.7 | 0.398228 |
Target: 5'- cAGCGCGGCGACGGcGUGcGGUucaaggGaCGCGAc -3' miRNA: 3'- -UCGCGCUGCUGCU-CAC-CCA------C-GCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 42243 | 0.72 | 0.316185 |
Target: 5'- cGGCGCGAaGACGuGGUGGGa-CGCGAGc -3' miRNA: 3'- -UCGCGCUgCUGC-UCACCCacGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 43471 | 0.68 | 0.512847 |
Target: 5'- aGGUGCGGCGGCagcaGGUGcGGcggGCGCAGc -3' miRNA: 3'- -UCGCGCUGCUGc---UCAC-CCa--CGCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 46298 | 0.71 | 0.347403 |
Target: 5'- gAGCGCGuuGCGGCGcuUGGcGUGCGCcAGc -3' miRNA: 3'- -UCGCGC--UGCUGCucACC-CACGCGuUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 46378 | 0.66 | 0.617498 |
Target: 5'- uGGCGgGuCaGCGAGcuaUGGGUGCGCc-- -3' miRNA: 3'- -UCGCgCuGcUGCUC---ACCCACGCGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 51580 | 0.71 | 0.331524 |
Target: 5'- uGCGCGGCGGCGAccGGGUGgucCAAGg -3' miRNA: 3'- uCGCGCUGCUGCUcaCCCACgc-GUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 53762 | 0.76 | 0.177262 |
Target: 5'- uGCGCGGCGGCGAac--GUGCGCAGGa -3' miRNA: 3'- uCGCGCUGCUGCUcaccCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 53791 | 0.67 | 0.564539 |
Target: 5'- cGGCGCGGCGcUGGGaucGGGuUGCGCc-- -3' miRNA: 3'- -UCGCGCUGCuGCUCa--CCC-ACGCGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 54631 | 0.66 | 0.628159 |
Target: 5'- cGCGCGAgGACgGGGUGuuGUGgGCGAc -3' miRNA: 3'- uCGCGCUgCUG-CUCACc-CACgCGUUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home