miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 5' -57.8 NC_004684.1 + 64850 0.66 0.649481
Target:  5'- aGGCGgGugGuuguggUGGG-GGGUGCGCGu- -3'
miRNA:   3'- -UCGCgCugCu-----GCUCaCCCACGCGUuc -5'
19113 5' -57.8 NC_004684.1 + 64541 0.7 0.407151
Target:  5'- cGGCuCGGCGGCcuuggugaccGGGUuGGUGCGCAGGa -3'
miRNA:   3'- -UCGcGCUGCUG----------CUCAcCCACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 63839 0.67 0.543662
Target:  5'- uGGCGCGGCGcACGcugucGGUGccacGUGCGCGGu -3'
miRNA:   3'- -UCGCGCUGC-UGC-----UCACc---CACGCGUUc -5'
19113 5' -57.8 NC_004684.1 + 62954 0.7 0.380764
Target:  5'- cGCGCGcCGACGAugGUGgcgugcucgguGGUGCGCAc- -3'
miRNA:   3'- uCGCGCuGCUGCU--CAC-----------CCACGCGUuc -5'
19113 5' -57.8 NC_004684.1 + 62645 0.67 0.596221
Target:  5'- aGGuCGCGGCacuuGCGGcuGUGGccGUGCGCGAGg -3'
miRNA:   3'- -UC-GCGCUGc---UGCU--CACC--CACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 61335 0.68 0.492707
Target:  5'- cAGCGCGGCGugGuuggucAGcUGGGc-CGCGAGg -3'
miRNA:   3'- -UCGCGCUGCugC------UC-ACCCacGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 58658 0.68 0.533317
Target:  5'- gGGCGCGGCGGCGAacaucGGGaucaGCGCc-- -3'
miRNA:   3'- -UCGCGCUGCUGCUca---CCCa---CGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 56993 0.67 0.543662
Target:  5'- gAGCGCGucaccgccgGgGACGAGcgcgccaucgGGGUGCGCuGGu -3'
miRNA:   3'- -UCGCGC---------UgCUGCUCa---------CCCACGCGuUC- -5'
19113 5' -57.8 NC_004684.1 + 54631 0.66 0.628159
Target:  5'- cGCGCGAgGACgGGGUGuuGUGgGCGAc -3'
miRNA:   3'- uCGCGCUgCUG-CUCACc-CACgCGUUc -5'
19113 5' -57.8 NC_004684.1 + 53791 0.67 0.564539
Target:  5'- cGGCGCGGCGcUGGGaucGGGuUGCGCc-- -3'
miRNA:   3'- -UCGCGCUGCuGCUCa--CCC-ACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 53762 0.76 0.177262
Target:  5'- uGCGCGGCGGCGAac--GUGCGCAGGa -3'
miRNA:   3'- uCGCGCUGCUGCUcaccCACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 51580 0.71 0.331524
Target:  5'- uGCGCGGCGGCGAccGGGUGgucCAAGg -3'
miRNA:   3'- uCGCGCUGCUGCUcaCCCACgc-GUUC- -5'
19113 5' -57.8 NC_004684.1 + 46378 0.66 0.617498
Target:  5'- uGGCGgGuCaGCGAGcuaUGGGUGCGCc-- -3'
miRNA:   3'- -UCGCgCuGcUGCUC---ACCCACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 46298 0.71 0.347403
Target:  5'- gAGCGCGuuGCGGCGcuUGGcGUGCGCcAGc -3'
miRNA:   3'- -UCGCGC--UGCUGCucACC-CACGCGuUC- -5'
19113 5' -57.8 NC_004684.1 + 43471 0.68 0.512847
Target:  5'- aGGUGCGGCGGCagcaGGUGcGGcggGCGCAGc -3'
miRNA:   3'- -UCGCGCUGCUGc---UCAC-CCa--CGCGUUc -5'
19113 5' -57.8 NC_004684.1 + 42243 0.72 0.316185
Target:  5'- cGGCGCGAaGACGuGGUGGGa-CGCGAGc -3'
miRNA:   3'- -UCGCGCUgCUGC-UCACCCacGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 41696 0.7 0.398228
Target:  5'- cAGCGCGGCGACGGcGUGcGGUucaaggGaCGCGAc -3'
miRNA:   3'- -UCGCGCUGCUGCU-CAC-CCA------C-GCGUUc -5'
19113 5' -57.8 NC_004684.1 + 36086 0.7 0.425366
Target:  5'- gAGcCGCGAUGggaggcaagcGCGcGGUGGGUGCGCc-- -3'
miRNA:   3'- -UC-GCGCUGC----------UGC-UCACCCACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 34422 0.66 0.628159
Target:  5'- uGCGUcgaGGCGGCGAGguUGGccaGCGCGAGc -3'
miRNA:   3'- uCGCG---CUGCUGCUC--ACCca-CGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 30771 0.69 0.472938
Target:  5'- cGaCGagGugGACGGGUGGGUGCuGCu-- -3'
miRNA:   3'- uC-GCg-CugCUGCUCACCCACG-CGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.