Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 41696 | 0.7 | 0.398228 |
Target: 5'- cAGCGCGGCGACGGcGUGcGGUucaaggGaCGCGAc -3' miRNA: 3'- -UCGCGCUGCUGCU-CAC-CCA------C-GCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 64541 | 0.7 | 0.407151 |
Target: 5'- cGGCuCGGCGGCcuuggugaccGGGUuGGUGCGCAGGa -3' miRNA: 3'- -UCGcGCUGCUG----------CUCAcCCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 12157 | 0.7 | 0.416198 |
Target: 5'- aGGaCGUGGCuaauGGCGuGUGGGUGcCGUAAGa -3' miRNA: 3'- -UC-GCGCUG----CUGCuCACCCAC-GCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 36086 | 0.7 | 0.425366 |
Target: 5'- gAGcCGCGAUGggaggcaagcGCGcGGUGGGUGCGCc-- -3' miRNA: 3'- -UC-GCGCUGC----------UGC-UCACCCACGCGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 27989 | 0.69 | 0.463205 |
Target: 5'- gAGUuCGGCGGCGucUGGGUGaUGCAGGu -3' miRNA: 3'- -UCGcGCUGCUGCucACCCAC-GCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 30771 | 0.69 | 0.472938 |
Target: 5'- cGaCGagGugGACGGGUGGGUGCuGCu-- -3' miRNA: 3'- uC-GCg-CugCUGCUCACCCACG-CGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 29187 | 0.69 | 0.482773 |
Target: 5'- cAGC-CGugGACGcAGUGGGUcucgGUGUggGa -3' miRNA: 3'- -UCGcGCugCUGC-UCACCCA----CGCGuuC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 5761 | 0.68 | 0.492707 |
Target: 5'- aAGgGUGACG-CG-GUGGG-GCGCAGc -3' miRNA: 3'- -UCgCGCUGCuGCuCACCCaCGCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 61335 | 0.68 | 0.492707 |
Target: 5'- cAGCGCGGCGugGuuggucAGcUGGGc-CGCGAGg -3' miRNA: 3'- -UCGCGCUGCugC------UC-ACCCacGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 8426 | 0.68 | 0.502733 |
Target: 5'- cAGCGCGGCagcucGGCGGacaGGGcccgGCGCAAGg -3' miRNA: 3'- -UCGCGCUG-----CUGCUca-CCCa---CGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 58658 | 0.68 | 0.533317 |
Target: 5'- gGGCGCGGCGGCGAacaucGGGaucaGCGCc-- -3' miRNA: 3'- -UCGCGCUGCUGCUca---CCCa---CGCGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 19957 | 0.67 | 0.550942 |
Target: 5'- gAGCGCG-CGACcaGGUGgugccggagcaccaGGUGCGCAAc -3' miRNA: 3'- -UCGCGCuGCUGc-UCAC--------------CCACGCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 7411 | 0.67 | 0.564539 |
Target: 5'- cGGCGCGuGCGGCaAGguccGGGUGCgGCAc- -3' miRNA: 3'- -UCGCGC-UGCUGcUCa---CCCACG-CGUuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 21967 | 0.69 | 0.482773 |
Target: 5'- gAGCgGCGGCGAcacCGAGgccaagGuGGUGCGcCAGGg -3' miRNA: 3'- -UCG-CGCUGCU---GCUCa-----C-CCACGC-GUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 5317 | 0.69 | 0.482773 |
Target: 5'- cGCGCuGGCGACcgugcagcAGUGGGUgGCGguGGg -3' miRNA: 3'- uCGCG-CUGCUGc-------UCACCCA-CGCguUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 7230 | 0.69 | 0.43372 |
Target: 5'- gAGCGCGugGAgGuGUGcccGGUGCaccaggaGCAAGg -3' miRNA: 3'- -UCGCGCugCUgCuCAC---CCACG-------CGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 19102 | 0.7 | 0.380764 |
Target: 5'- uGCGCGAaGGCcGGUGGGacgUGCGCAu- -3' miRNA: 3'- uCGCGCUgCUGcUCACCC---ACGCGUuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 5030 | 0.76 | 0.177262 |
Target: 5'- -cCGCGACGACGA---GGUGCGCAGGc -3' miRNA: 3'- ucGCGCUGCUGCUcacCCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 53762 | 0.76 | 0.177262 |
Target: 5'- uGCGCGGCGGCGAac--GUGCGCAGGa -3' miRNA: 3'- uCGCGCUGCUGCUcaccCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 618 | 0.66 | 0.664376 |
Target: 5'- aAGgGCGGCGAguaccgcgcCGAGgucgccgGGGUgcuguaccgggugguGCGCAAGa -3' miRNA: 3'- -UCgCGCUGCU---------GCUCa------CCCA---------------CGCGUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home