miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19113 5' -57.8 NC_004684.1 + 3312 1.09 0.000725
Target:  5'- gAGCGCGACGACGAGUGGGUGCGCAAGg -3'
miRNA:   3'- -UCGCGCUGCUGCUCACCCACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 34422 0.66 0.628159
Target:  5'- uGCGUcgaGGCGGCGAGguUGGccaGCGCGAGc -3'
miRNA:   3'- uCGCG---CUGCUGCUC--ACCca-CGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 3115 0.66 0.635624
Target:  5'- uGCGCG-CGGucaucucccccguuCGGGUGGuGUGCGCc-- -3'
miRNA:   3'- uCGCGCuGCU--------------GCUCACC-CACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 618 0.66 0.664376
Target:  5'- aAGgGCGGCGAguaccgcgcCGAGgucgccgGGGUgcuguaccgggugguGCGCAAGa -3'
miRNA:   3'- -UCgCGCUGCU---------GCUCa------CCCA---------------CGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 7230 0.69 0.43372
Target:  5'- gAGCGCGugGAgGuGUGcccGGUGCaccaggaGCAAGg -3'
miRNA:   3'- -UCGCGCugCUgCuCAC---CCACG-------CGUUC- -5'
19113 5' -57.8 NC_004684.1 + 5317 0.69 0.482773
Target:  5'- cGCGCuGGCGACcgugcagcAGUGGGUgGCGguGGg -3'
miRNA:   3'- uCGCG-CUGCUGc-------UCACCCA-CGCguUC- -5'
19113 5' -57.8 NC_004684.1 + 61335 0.68 0.492707
Target:  5'- cAGCGCGGCGugGuuggucAGcUGGGc-CGCGAGg -3'
miRNA:   3'- -UCGCGCUGCugC------UC-ACCCacGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 8426 0.68 0.502733
Target:  5'- cAGCGCGGCagcucGGCGGacaGGGcccgGCGCAAGg -3'
miRNA:   3'- -UCGCGCUG-----CUGCUca-CCCa---CGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 7411 0.67 0.564539
Target:  5'- cGGCGCGuGCGGCaAGguccGGGUGCgGCAc- -3'
miRNA:   3'- -UCGCGC-UGCUGcUCa---CCCACG-CGUuc -5'
19113 5' -57.8 NC_004684.1 + 62645 0.67 0.596221
Target:  5'- aGGuCGCGGCacuuGCGGcuGUGGccGUGCGCGAGg -3'
miRNA:   3'- -UC-GCGCUGc---UGCU--CACC--CACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 19957 0.67 0.550942
Target:  5'- gAGCGCG-CGACcaGGUGgugccggagcaccaGGUGCGCAAc -3'
miRNA:   3'- -UCGCGCuGCUGc-UCAC--------------CCACGCGUUc -5'
19113 5' -57.8 NC_004684.1 + 53762 0.76 0.177262
Target:  5'- uGCGCGGCGGCGAac--GUGCGCAGGa -3'
miRNA:   3'- uCGCGCUGCUGCUcaccCACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 46378 0.66 0.617498
Target:  5'- uGGCGgGuCaGCGAGcuaUGGGUGCGCc-- -3'
miRNA:   3'- -UCGCgCuGcUGCUC---ACCCACGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 5030 0.76 0.177262
Target:  5'- -cCGCGACGACGA---GGUGCGCAGGc -3'
miRNA:   3'- ucGCGCUGCUGCUcacCCACGCGUUC- -5'
19113 5' -57.8 NC_004684.1 + 58658 0.68 0.533317
Target:  5'- gGGCGCGGCGGCGAacaucGGGaucaGCGCc-- -3'
miRNA:   3'- -UCGCGCUGCUGCUca---CCCa---CGCGuuc -5'
19113 5' -57.8 NC_004684.1 + 24768 0.66 0.617498
Target:  5'- cAGCaccgGCGGCGGCGGGgGaGGUGC-CGGGu -3'
miRNA:   3'- -UCG----CGCUGCUGCUCaC-CCACGcGUUC- -5'
19113 5' -57.8 NC_004684.1 + 1487 0.66 0.660125
Target:  5'- cGGUGCGGCGGCccuGGUGGccaaccUGCGCGc- -3'
miRNA:   3'- -UCGCGCUGCUGc--UCACCc-----ACGCGUuc -5'
19113 5' -57.8 NC_004684.1 + 19102 0.7 0.380764
Target:  5'- uGCGCGAaGGCcGGUGGGacgUGCGCAu- -3'
miRNA:   3'- uCGCGCUgCUGcUCACCC---ACGCGUuc -5'
19113 5' -57.8 NC_004684.1 + 21967 0.69 0.482773
Target:  5'- gAGCgGCGGCGAcacCGAGgccaagGuGGUGCGcCAGGg -3'
miRNA:   3'- -UCG-CGCUGCU---GCUCa-----C-CCACGC-GUUC- -5'
19113 5' -57.8 NC_004684.1 + 27772 0.67 0.585622
Target:  5'- cGCGCGACccccgccAgGAGUGGGaGCGCu-- -3'
miRNA:   3'- uCGCGCUGc------UgCUCACCCaCGCGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.