Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 21239 | 0.66 | 0.649481 |
Target: 5'- uGGCGUGGCcGCGAgGUGuucGUGCGCcAGg -3' miRNA: 3'- -UCGCGCUGcUGCU-CACc--CACGCGuUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 64850 | 0.66 | 0.649481 |
Target: 5'- aGGCGgGugGuuguggUGGG-GGGUGCGCGu- -3' miRNA: 3'- -UCGCgCugCu-----GCUCaCCCACGCGUuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 41696 | 0.7 | 0.398228 |
Target: 5'- cAGCGCGGCGACGGcGUGcGGUucaaggGaCGCGAc -3' miRNA: 3'- -UCGCGCUGCUGCU-CAC-CCA------C-GCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 22358 | 0.66 | 0.638823 |
Target: 5'- cGGCgGCGGCGGCGgucgcgcuggcGGUGGacGUGCAGGc -3' miRNA: 3'- -UCG-CGCUGCUGC-----------UCACCcaCGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 27006 | 0.66 | 0.632425 |
Target: 5'- gGGCGCGGCGAucaacagccaggcacCGGGUGccGGUG-GCAu- -3' miRNA: 3'- -UCGCGCUGCU---------------GCUCAC--CCACgCGUuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 54631 | 0.66 | 0.628159 |
Target: 5'- cGCGCGAgGACgGGGUGuuGUGgGCGAc -3' miRNA: 3'- uCGCGCUgCUG-CUCACc-CACgCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 62954 | 0.7 | 0.380764 |
Target: 5'- cGCGCGcCGACGAugGUGgcgugcucgguGGUGCGCAc- -3' miRNA: 3'- uCGCGCuGCUGCU--CAC-----------CCACGCGUuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 64541 | 0.7 | 0.407151 |
Target: 5'- cGGCuCGGCGGCcuuggugaccGGGUuGGUGCGCAGGa -3' miRNA: 3'- -UCGcGCUGCUG----------CUCAcCCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 27989 | 0.69 | 0.463205 |
Target: 5'- gAGUuCGGCGGCGucUGGGUGaUGCAGGu -3' miRNA: 3'- -UCGcGCUGCUGCucACCCAC-GCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 30771 | 0.69 | 0.472938 |
Target: 5'- cGaCGagGugGACGGGUGGGUGCuGCu-- -3' miRNA: 3'- uC-GCg-CugCUGCUCACCCACG-CGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 29187 | 0.69 | 0.482773 |
Target: 5'- cAGC-CGugGACGcAGUGGGUcucgGUGUggGa -3' miRNA: 3'- -UCGcGCugCUGC-UCACCCA----CGCGuuC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 5761 | 0.68 | 0.492707 |
Target: 5'- aAGgGUGACG-CG-GUGGG-GCGCAGc -3' miRNA: 3'- -UCgCGCUGCuGCuCACCCaCGCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 43471 | 0.68 | 0.512847 |
Target: 5'- aGGUGCGGCGGCagcaGGUGcGGcggGCGCAGc -3' miRNA: 3'- -UCGCGCUGCUGc---UCAC-CCa--CGCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 26580 | 0.67 | 0.543662 |
Target: 5'- uGGCGCG-CGGCG-GU--GUGCGCGGGu -3' miRNA: 3'- -UCGCGCuGCUGCuCAccCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 28249 | 0.67 | 0.543662 |
Target: 5'- cAGCGCGGuggaccCGGCcAGccuGGUGCGCGAGg -3' miRNA: 3'- -UCGCGCU------GCUGcUCac-CCACGCGUUC- -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 2264 | 0.67 | 0.561393 |
Target: 5'- cAGCGCGGCGGCGGGcauugccgccagccUGGGccacGaCGCGGu -3' miRNA: 3'- -UCGCGCUGCUGCUC--------------ACCCa---C-GCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 53791 | 0.67 | 0.564539 |
Target: 5'- cGGCGCGGCGcUGGGaucGGGuUGCGCc-- -3' miRNA: 3'- -UCGCGCUGCuGCUCa--CCC-ACGCGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 16789 | 0.66 | 0.606849 |
Target: 5'- aGGUGCGGCGcguCGuguGGUGGGcGCGCc-- -3' miRNA: 3'- -UCGCGCUGCu--GC---UCACCCaCGCGuuc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 12077 | 0.66 | 0.617498 |
Target: 5'- gAGCGCGACGAgGuGcUGGcccGCGCGGc -3' miRNA: 3'- -UCGCGCUGCUgCuC-ACCca-CGCGUUc -5' |
|||||||
19113 | 5' | -57.8 | NC_004684.1 | + | 9202 | 0.66 | 0.628159 |
Target: 5'- gGGCGCaGugGGCGcGUgaccGGGUGgGCcAGg -3' miRNA: 3'- -UCGCG-CugCUGCuCA----CCCACgCGuUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home