miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19114 3' -58.1 NC_004684.1 + 55789 0.66 0.603025
Target:  5'- --aUGG-CGGCGUgACCGGGugguCCGGUGa -3'
miRNA:   3'- uugACCaGCUGCA-UGGCCC----GGCCAUg -5'
19114 3' -58.1 NC_004684.1 + 14025 0.68 0.47906
Target:  5'- cAACUcGGUCaACGUccugcuguACCcGGCCGGUACc -3'
miRNA:   3'- -UUGA-CCAGcUGCA--------UGGcCCGGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 47306 0.68 0.488971
Target:  5'- gAGCUGGUUGGcCGUcACCGugucGCCGGUGu -3'
miRNA:   3'- -UUGACCAGCU-GCA-UGGCc---CGGCCAUg -5'
19114 3' -58.1 NC_004684.1 + 64572 0.68 0.498977
Target:  5'- cGCaGGaUCG-UGUACCGGcCCGGUACg -3'
miRNA:   3'- uUGaCC-AGCuGCAUGGCCcGGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 158 0.66 0.58179
Target:  5'- cGCcGGUCGAacCGgugACCGGGuuGGUc- -3'
miRNA:   3'- uUGaCCAGCU--GCa--UGGCCCggCCAug -5'
19114 3' -58.1 NC_004684.1 + 51168 0.66 0.592392
Target:  5'- gGugUGGcCGAUGcGCCGGGCCauGG-ACc -3'
miRNA:   3'- -UugACCaGCUGCaUGGCCCGG--CCaUG- -5'
19114 3' -58.1 NC_004684.1 + 29532 0.66 0.601961
Target:  5'- cGCUGGUCGGugguugccggUGUACCgauucugGGGCCGcUGCc -3'
miRNA:   3'- uUGACCAGCU----------GCAUGG-------CCCGGCcAUG- -5'
19114 3' -58.1 NC_004684.1 + 27137 0.66 0.603025
Target:  5'- cGCUGaUCGACGUGCUGGGCg----- -3'
miRNA:   3'- uUGACcAGCUGCAUGGCCCGgccaug -5'
19114 3' -58.1 NC_004684.1 + 28061 0.66 0.603025
Target:  5'- --gUGGUCGgccccgGCGgugugGCCGGGCCGccGCg -3'
miRNA:   3'- uugACCAGC------UGCa----UGGCCCGGCcaUG- -5'
19114 3' -58.1 NC_004684.1 + 9540 0.68 0.469249
Target:  5'- gAGCUGGUgCGcCG-GuuGGaGCCGGUGCg -3'
miRNA:   3'- -UUGACCA-GCuGCaUggCC-CGGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 46674 0.68 0.469249
Target:  5'- -gUUGcGUUGGCGUugCGGuGgCGGUGCg -3'
miRNA:   3'- uuGAC-CAGCUGCAugGCC-CgGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 4990 0.69 0.449942
Target:  5'- cACUccgCGACGUACCGGGCgaaGGUGg -3'
miRNA:   3'- uUGAccaGCUGCAUGGCCCGg--CCAUg -5'
19114 3' -58.1 NC_004684.1 + 28805 0.77 0.134222
Target:  5'- gAGCUGGugcUCGACGgugugACCGGGC-GGUACa -3'
miRNA:   3'- -UUGACC---AGCUGCa----UGGCCCGgCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 49205 0.77 0.137889
Target:  5'- uGCUcGGUCGGCcagucggucgGUGCCGGGCCGGgcgucgGCa -3'
miRNA:   3'- uUGA-CCAGCUG----------CAUGGCCCGGCCa-----UG- -5'
19114 3' -58.1 NC_004684.1 + 57824 0.71 0.344205
Target:  5'- -cCUGGUccCGGCgGUGCUGGccGCCGGUACc -3'
miRNA:   3'- uuGACCA--GCUG-CAUGGCC--CGGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 64538 0.7 0.360538
Target:  5'- cAGC-GGcUCGGCGgccuuggugACCGGGuuGGUGCg -3'
miRNA:   3'- -UUGaCC-AGCUGCa--------UGGCCCggCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 22813 0.7 0.363869
Target:  5'- cGCUGGUCGACcggcaguucccggcgGUgcagGCCGGGCUGGc-- -3'
miRNA:   3'- uUGACCAGCUG---------------CA----UGGCCCGGCCaug -5'
19114 3' -58.1 NC_004684.1 + 25518 0.7 0.403678
Target:  5'- cGGCUGuucUCGACcgccgacGCCGGGUCGGUGCu -3'
miRNA:   3'- -UUGACc--AGCUGca-----UGGCCCGGCCAUG- -5'
19114 3' -58.1 NC_004684.1 + 42208 0.69 0.41269
Target:  5'- gAGCUGGUggcCGACGUggccGCCGGuGUCGGcACc -3'
miRNA:   3'- -UUGACCA---GCUGCA----UGGCC-CGGCCaUG- -5'
19114 3' -58.1 NC_004684.1 + 13030 0.69 0.440454
Target:  5'- ---cGGUU-ACGUcGCCGGGCCGGUcgGCu -3'
miRNA:   3'- uugaCCAGcUGCA-UGGCCCGGCCA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.