miRNA display CGI


Results 21 - 40 of 407 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19114 5' -58.7 NC_004684.1 + 60644 0.66 0.612257
Target:  5'- cGUGCACCcgacGGCuCCGGgccaGCCAGGuGUCGc -3'
miRNA:   3'- -CGCGUGG----UUG-GGCCag--UGGUUC-CGGC- -5'
19114 5' -58.7 NC_004684.1 + 55499 0.66 0.612257
Target:  5'- cGCGCACguugaauCCCGGUguguucacCGCCAGcGCCGc -3'
miRNA:   3'- -CGCGUGguu----GGGCCA--------GUGGUUcCGGC- -5'
19114 5' -58.7 NC_004684.1 + 43898 0.66 0.612257
Target:  5'- aGCGUcuuCCAgGCCggaaagCGGUCACCAccGCCGu -3'
miRNA:   3'- -CGCGu--GGU-UGG------GCCAGUGGUucCGGC- -5'
19114 5' -58.7 NC_004684.1 + 19763 0.66 0.612257
Target:  5'- uGCGCgGCCug-CCGGUgccCGCCGGGGgCGa -3'
miRNA:   3'- -CGCG-UGGuugGGCCA---GUGGUUCCgGC- -5'
19114 5' -58.7 NC_004684.1 + 22682 0.66 0.612257
Target:  5'- aGCGC-UCAAggacauggcCCCGGcggcgcaggacgUgGCCAAGGCCGu -3'
miRNA:   3'- -CGCGuGGUU---------GGGCC------------AgUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 19547 0.66 0.612257
Target:  5'- gGUGCGCCGggcgguGCCaGGUCuCCG-GGCCu -3'
miRNA:   3'- -CGCGUGGU------UGGgCCAGuGGUuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 64078 0.66 0.611202
Target:  5'- uGCGCACCcACUCGucGUCgcgcucgcgcuguGCCAuGGCCu -3'
miRNA:   3'- -CGCGUGGuUGGGC--CAG-------------UGGUuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 17337 0.66 0.60172
Target:  5'- --cCGCCAguccACCCGGUCaaaagggaguGCgGAGGCCu -3'
miRNA:   3'- cgcGUGGU----UGGGCCAG----------UGgUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 11951 0.66 0.60172
Target:  5'- -gGuCGCCAGCCUGG-CACCugcGGcGCCa -3'
miRNA:   3'- cgC-GUGGUUGGGCCaGUGGu--UC-CGGc -5'
19114 5' -58.7 NC_004684.1 + 18754 0.66 0.60172
Target:  5'- -aGCACCGAcgaaacaaccCCCGuac-CCGAGGCCGg -3'
miRNA:   3'- cgCGUGGUU----------GGGCcaguGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 64935 0.66 0.60172
Target:  5'- gGCaCGCCGAgCUGGcCGCCcAGGCgGg -3'
miRNA:   3'- -CGcGUGGUUgGGCCaGUGGuUCCGgC- -5'
19114 5' -58.7 NC_004684.1 + 52676 0.66 0.60172
Target:  5'- -aGCACCucuuuGACCCGGUUgGCCAGGuCCu -3'
miRNA:   3'- cgCGUGG-----UUGGGCCAG-UGGUUCcGGc -5'
19114 5' -58.7 NC_004684.1 + 1488 0.66 0.60172
Target:  5'- gGUGCGgCGGCCCuGGUgGCCAAccugcGcGCCGc -3'
miRNA:   3'- -CGCGUgGUUGGG-CCAgUGGUU-----C-CGGC- -5'
19114 5' -58.7 NC_004684.1 + 40200 0.66 0.60172
Target:  5'- uCGCACCGccGCCaaaGaUCGCCGuGGCCa -3'
miRNA:   3'- cGCGUGGU--UGGg--CcAGUGGUuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 2080 0.66 0.598563
Target:  5'- aGCGCGCCAGCUCGcaacugguggcgcagCACUAcGGCgCGg -3'
miRNA:   3'- -CGCGUGGUUGGGCca-------------GUGGUuCCG-GC- -5'
19114 5' -58.7 NC_004684.1 + 58388 0.66 0.595409
Target:  5'- -gGCACCGcgcguggaggccuugGCCCGGcCGCCGGaaccccGCCGg -3'
miRNA:   3'- cgCGUGGU---------------UGGGCCaGUGGUUc-----CGGC- -5'
19114 5' -58.7 NC_004684.1 + 18236 0.66 0.595409
Target:  5'- cUGCGCCGuacuGCCCGGUgugcgagACCGgcgacgguacguuccAGGCCGa -3'
miRNA:   3'- cGCGUGGU----UGGGCCAg------UGGU---------------UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 24778 0.66 0.591207
Target:  5'- -gGCACCGGgCCgcuGGUCgauacgGCCAAGGCgGu -3'
miRNA:   3'- cgCGUGGUUgGG---CCAG------UGGUUCCGgC- -5'
19114 5' -58.7 NC_004684.1 + 48622 0.66 0.591207
Target:  5'- cCGUACCGGCCuCGGgUACgGGGGuuGu -3'
miRNA:   3'- cGCGUGGUUGG-GCCaGUGgUUCCggC- -5'
19114 5' -58.7 NC_004684.1 + 12018 0.66 0.591207
Target:  5'- uCGCGgCGGC--GGUgGCCAAGGCCa -3'
miRNA:   3'- cGCGUgGUUGggCCAgUGGUUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.