miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 3' -55.6 NC_004684.1 + 2376 0.66 0.782901
Target:  5'- aUCGACAugGCCAccuucgccggguGCGGCGUGcacGUCguGGCa -3'
miRNA:   3'- -AGCUGUcgUGGU------------UGCCGCAC---CAG--UCG- -5'
19115 3' -55.6 NC_004684.1 + 16393 0.66 0.782901
Target:  5'- aUCGACuacauccGCACCcaGACGGUGcuguucGGUCuGCu -3'
miRNA:   3'- -AGCUGu------CGUGG--UUGCCGCa-----CCAGuCG- -5'
19115 3' -55.6 NC_004684.1 + 25831 0.66 0.782901
Target:  5'- -aGaACGGCAUCGGCGGCcagaUGcUCGGCg -3'
miRNA:   3'- agC-UGUCGUGGUUGCCGc---ACcAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 51952 0.66 0.782901
Target:  5'- gUCG-CAGCACCGGCuccagcagcagGGUGgccacgGuGUCGGCc -3'
miRNA:   3'- -AGCuGUCGUGGUUG-----------CCGCa-----C-CAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 49750 0.66 0.782901
Target:  5'- cUCGGCAcggagcGCACCAGCG-CG-GGUgaucuccucCAGCa -3'
miRNA:   3'- -AGCUGU------CGUGGUUGCcGCaCCA---------GUCG- -5'
19115 3' -55.6 NC_004684.1 + 58643 0.66 0.782901
Target:  5'- cUUGAuCAGCucGCCGggcGCGGCGgcgaacaucgGGaUCAGCg -3'
miRNA:   3'- -AGCU-GUCG--UGGU---UGCCGCa---------CC-AGUCG- -5'
19115 3' -55.6 NC_004684.1 + 39039 0.66 0.782901
Target:  5'- cUCGGCGGUGuCCAuugugcgcCGG-GUGGcCAGCg -3'
miRNA:   3'- -AGCUGUCGU-GGUu-------GCCgCACCaGUCG- -5'
19115 3' -55.6 NC_004684.1 + 40146 0.66 0.782901
Target:  5'- cCGACAGgAUgGgauCGGUGaucgcGGUCAGCg -3'
miRNA:   3'- aGCUGUCgUGgUu--GCCGCa----CCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 50346 0.66 0.782901
Target:  5'- cUCGACguugAGCgagaaauucaACCgGGCGGCGUGGugcuuauucucgUCGGCc -3'
miRNA:   3'- -AGCUG----UCG----------UGG-UUGCCGCACC------------AGUCG- -5'
19115 3' -55.6 NC_004684.1 + 60011 0.66 0.782901
Target:  5'- -gGACGGCGCaGGCGGgG-GGUCucgucuccAGCa -3'
miRNA:   3'- agCUGUCGUGgUUGCCgCaCCAG--------UCG- -5'
19115 3' -55.6 NC_004684.1 + 32234 0.66 0.781927
Target:  5'- aUCGACAGCGgC-GCGaucuacugcGCGUcggaccuguuggcGGUCGGCg -3'
miRNA:   3'- -AGCUGUCGUgGuUGC---------CGCA-------------CCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 59930 0.66 0.777033
Target:  5'- gUCGAUGGuCaugcucgguccuccaGCCAGuCGGCGaaacgGGUCAGUg -3'
miRNA:   3'- -AGCUGUC-G---------------UGGUU-GCCGCa----CCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 53500 0.66 0.777033
Target:  5'- gUCGAUGGCggggaagagguccggGCCcagGACGGUGUcGUCGGUg -3'
miRNA:   3'- -AGCUGUCG---------------UGG---UUGCCGCAcCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 40712 0.66 0.773092
Target:  5'- gCGGCGGUggccgggacgACCAgcGCGGCGgGGgCGGUg -3'
miRNA:   3'- aGCUGUCG----------UGGU--UGCCGCaCCaGUCG- -5'
19115 3' -55.6 NC_004684.1 + 18290 0.66 0.773092
Target:  5'- cCGACGGCgACCugUGGCaccugccGGUUGGCg -3'
miRNA:   3'- aGCUGUCG-UGGuuGCCGca-----CCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 36592 0.66 0.773092
Target:  5'- cCGACGGCACgGuguaGGUGccGGaCAGCa -3'
miRNA:   3'- aGCUGUCGUGgUug--CCGCa-CCaGUCG- -5'
19115 3' -55.6 NC_004684.1 + 55765 0.66 0.773092
Target:  5'- cCGACGGUcaggcgGCCGACGGCcaGcUCGGUg -3'
miRNA:   3'- aGCUGUCG------UGGUUGCCGcaCcAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 46620 0.66 0.773092
Target:  5'- uUCGGgGcCACCGccucCGGUGUGGaCGGCa -3'
miRNA:   3'- -AGCUgUcGUGGUu---GCCGCACCaGUCG- -5'
19115 3' -55.6 NC_004684.1 + 8114 0.66 0.773092
Target:  5'- cCGGCAGCAUUGACGaggacgaccGCGUcggugcucgGGUgCAGCa -3'
miRNA:   3'- aGCUGUCGUGGUUGC---------CGCA---------CCA-GUCG- -5'
19115 3' -55.6 NC_004684.1 + 63697 0.66 0.773092
Target:  5'- gCGGCGGCGCUGGCGaucuccugccaGCGUgccaacagGGUguGCg -3'
miRNA:   3'- aGCUGUCGUGGUUGC-----------CGCA--------CCAguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.