miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 3' -55.6 NC_004684.1 + 53463 0.73 0.384957
Target:  5'- gUGuCAGCACCGgcaACGG-GUGGUUGGCc -3'
miRNA:   3'- aGCuGUCGUGGU---UGCCgCACCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 25680 0.74 0.326837
Target:  5'- gCGACcuacGGCGgCAACGcGCGUGGcgCAGCu -3'
miRNA:   3'- aGCUG----UCGUgGUUGC-CGCACCa-GUCG- -5'
19115 3' -55.6 NC_004684.1 + 11611 0.73 0.342757
Target:  5'- aCGACGGCACCGAgcUGGCc--GUCGGCc -3'
miRNA:   3'- aGCUGUCGUGGUU--GCCGcacCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 1223 0.73 0.342757
Target:  5'- uUCGuCGGCcUCGGCGGCcUGGUCGGUc -3'
miRNA:   3'- -AGCuGUCGuGGUUGCCGcACCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 6155 0.73 0.350925
Target:  5'- uUCGACGGCggcgGCCAGCGuGCGgcGGUaGGCa -3'
miRNA:   3'- -AGCUGUCG----UGGUUGC-CGCa-CCAgUCG- -5'
19115 3' -55.6 NC_004684.1 + 18462 0.73 0.359229
Target:  5'- aCGACGGCACCGAgcUGGUGcuGUCGGUg -3'
miRNA:   3'- aGCUGUCGUGGUU--GCCGCacCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 45212 0.73 0.376247
Target:  5'- gCGGCAGCGcguCCAuGCGGCGcuuggugcUGGUCAGg -3'
miRNA:   3'- aGCUGUCGU---GGU-UGCCGC--------ACCAGUCg -5'
19115 3' -55.6 NC_004684.1 + 11985 0.73 0.384957
Target:  5'- cCGGCGGCACCGACGGCaUGaccccgCAGg -3'
miRNA:   3'- aGCUGUCGUGGUUGCCGcACca----GUCg -5'
19115 3' -55.6 NC_004684.1 + 36784 0.73 0.384957
Target:  5'- cCGAC-GCuggUCGGCGGCGgcucGGUCAGCu -3'
miRNA:   3'- aGCUGuCGu--GGUUGCCGCa---CCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 36872 0.74 0.319085
Target:  5'- gCGACA-UGCUggUGGcCGUGGUCGGCa -3'
miRNA:   3'- aGCUGUcGUGGuuGCC-GCACCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 66012 0.75 0.289463
Target:  5'- aCGGCGGCcuuggcgucgGCCAGgguguUGGCGuUGGUCAGCc -3'
miRNA:   3'- aGCUGUCG----------UGGUU-----GCCGC-ACCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 23660 0.75 0.275481
Target:  5'- cUGACcgGGUacACCGACGGCcUGGUCGGCc -3'
miRNA:   3'- aGCUG--UCG--UGGUUGCCGcACCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 49184 0.81 0.121639
Target:  5'- gCGGCGGCGgCGGCGGCGgccugcucGGUCGGCc -3'
miRNA:   3'- aGCUGUCGUgGUUGCCGCa-------CCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 30949 0.79 0.147249
Target:  5'- cCGACGaccuggacucGCugUggAACGGCGUGGUCGGCa -3'
miRNA:   3'- aGCUGU----------CGugG--UUGCCGCACCAGUCG- -5'
19115 3' -55.6 NC_004684.1 + 41948 0.78 0.182462
Target:  5'- aCGGCGGCACCAACGGCcUGGaggaccgcaaGGCg -3'
miRNA:   3'- aGCUGUCGUGGUUGCCGcACCag--------UCG- -5'
19115 3' -55.6 NC_004684.1 + 49641 0.77 0.202729
Target:  5'- gCGGCuccaggAGCACCGaccACGGCGUGGacUCGGCc -3'
miRNA:   3'- aGCUG------UCGUGGU---UGCCGCACC--AGUCG- -5'
19115 3' -55.6 NC_004684.1 + 43757 0.77 0.202729
Target:  5'- cUGACGGUACC---GGCGUGGUCAGg -3'
miRNA:   3'- aGCUGUCGUGGuugCCGCACCAGUCg -5'
19115 3' -55.6 NC_004684.1 + 46592 0.77 0.213024
Target:  5'- cUCGACGGCGgCGACGGCGgcGGUUugguacgAGCg -3'
miRNA:   3'- -AGCUGUCGUgGUUGCCGCa-CCAG-------UCG- -5'
19115 3' -55.6 NC_004684.1 + 23546 0.77 0.219188
Target:  5'- cUCGGCGGCAUCGgucGCGGCcUGGaCAGCc -3'
miRNA:   3'- -AGCUGUCGUGGU---UGCCGcACCaGUCG- -5'
19115 3' -55.6 NC_004684.1 + 43475 0.75 0.268694
Target:  5'- gCGGCGGCAgCAgguGCGGCG-GGcgCAGCg -3'
miRNA:   3'- aGCUGUCGUgGU---UGCCGCaCCa-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.