miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 9227 0.66 0.519917
Target:  5'- gGGCCAGgacccgaaccugcuGCCGACGC-UGGCggugcucauccccgaGCUGGCc -3'
miRNA:   3'- gUCGGUC--------------UGGCUGCGgACCG---------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41078 0.66 0.518907
Target:  5'- uCGG-CGGcCCGGCgGCCUGGC-CgAGCu -3'
miRNA:   3'- -GUCgGUCuGGCUG-CGGACCGuGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 27266 0.66 0.518907
Target:  5'- aGGUCGGuGCCGAgGCCgccaGCGCCcGCu -3'
miRNA:   3'- gUCGGUC-UGGCUgCGGac--CGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 8396 0.66 0.518907
Target:  5'- uGGCgCAGuCCGGCgauGCCgaacGGUaACCAGCg -3'
miRNA:   3'- gUCG-GUCuGGCUG---CGGa---CCG-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15263 0.66 0.518907
Target:  5'- uGGCCuGGCCaACacCCUGGUggccACCAGCc -3'
miRNA:   3'- gUCGGuCUGGcUGc-GGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 26440 0.66 0.518907
Target:  5'- -cGCCGGuggcCCGguguacggcggcACGCCUGGCcgcgaCAGCg -3'
miRNA:   3'- guCGGUCu---GGC------------UGCGGACCGug---GUCG- -5'
19115 5' -60.2 NC_004684.1 + 25339 0.66 0.518907
Target:  5'- gCGGCCuccCCgGugGCCuUGGCGgCGGCc -3'
miRNA:   3'- -GUCGGucuGG-CugCGG-ACCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 7632 0.66 0.518907
Target:  5'- gAGCCAGcucGCCGugGCg-GGCGuggugaccgggUCGGCg -3'
miRNA:   3'- gUCGGUC---UGGCugCGgaCCGU-----------GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 7027 0.66 0.518907
Target:  5'- -uGCCcaaccuGACCGA--CCUGGCACC-GCu -3'
miRNA:   3'- guCGGu-----CUGGCUgcGGACCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 5627 0.66 0.518907
Target:  5'- -uGCUGGAgCugGACGCCUGGUucGCCcguGGCg -3'
miRNA:   3'- guCGGUCUgG--CUGCGGACCG--UGG---UCG- -5'
19115 5' -60.2 NC_004684.1 + 8059 0.66 0.518907
Target:  5'- aCGGCCGGGUCGugGCCgagUGGCcaaucgaggagcGCCcgugAGCa -3'
miRNA:   3'- -GUCGGUCUGGCugCGG---ACCG------------UGG----UCG- -5'
19115 5' -60.2 NC_004684.1 + 18569 0.66 0.511852
Target:  5'- gCGGCCgaggucaAGACCG-CGCUgguggcucuggacgaUGGCuuugagGCCAGCg -3'
miRNA:   3'- -GUCGG-------UCUGGCuGCGG---------------ACCG------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15753 0.66 0.508841
Target:  5'- aCGGCCAGcaGCUG-CGCagcGGCACCuaucGCg -3'
miRNA:   3'- -GUCGGUC--UGGCuGCGga-CCGUGGu---CG- -5'
19115 5' -60.2 NC_004684.1 + 13803 0.66 0.508841
Target:  5'- gCGGCgCAcuGuCCGAcCGCCUGGagcacgauUACCAGCu -3'
miRNA:   3'- -GUCG-GU--CuGGCU-GCGGACC--------GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 37609 0.66 0.508841
Target:  5'- gGGCCcGGCCGcccaugccgaACGCCgucgGuGCGCUGGCc -3'
miRNA:   3'- gUCGGuCUGGC----------UGCGGa---C-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 33190 0.66 0.508841
Target:  5'- aGGUCGucACCGugGCCaUGGCGacggacagcCCGGCg -3'
miRNA:   3'- gUCGGUc-UGGCugCGG-ACCGU---------GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 314 0.66 0.508841
Target:  5'- -cGCCgAGGCCaACGCCc-GCACCGGg -3'
miRNA:   3'- guCGG-UCUGGcUGCGGacCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 23713 0.66 0.508841
Target:  5'- -uGUCGGACCucGACGCCgugugGGCugaguuCCAGg -3'
miRNA:   3'- guCGGUCUGG--CUGCGGa----CCGu-----GGUCg -5'
19115 5' -60.2 NC_004684.1 + 10240 0.66 0.508841
Target:  5'- uCGGCC--ACCGcCGCCaUGGaggcgaACCAGCc -3'
miRNA:   3'- -GUCGGucUGGCuGCGG-ACCg-----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 65905 0.66 0.508841
Target:  5'- uGGCCAccagGGCCGcCGCaccgGGCAcguCCGGCc -3'
miRNA:   3'- gUCGGU----CUGGCuGCGga--CCGU---GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.