miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 26815 0.66 0.487979
Target:  5'- gGGCCGGuugaugaacgacACCaGCGCgCUGGUggaccggucgagcACCAGCg -3'
miRNA:   3'- gUCGGUC------------UGGcUGCG-GACCG-------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 30645 0.66 0.468493
Target:  5'- gGGCCAGAacggcauCCGGCuCCaGGUGCgGGCa -3'
miRNA:   3'- gUCGGUCU-------GGCUGcGGaCCGUGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 42868 0.66 0.468493
Target:  5'- cCAaCCAGGCCGccgcACGCCcggccucUGGCACCGa- -3'
miRNA:   3'- -GUcGGUCUGGC----UGCGG-------ACCGUGGUcg -5'
19115 5' -60.2 NC_004684.1 + 11782 0.66 0.486996
Target:  5'- uGGCCccguGGGCCGACcagGCCaccguggagaagGGCGCgAGCg -3'
miRNA:   3'- gUCGG----UCUGGCUG---CGGa-----------CCGUGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 54229 0.66 0.492911
Target:  5'- uCGGCCAGcagcuguuccagggcACCG-CGCCgGGacagcuccucaGCCAGCg -3'
miRNA:   3'- -GUCGGUC---------------UGGCuGCGGaCCg----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 57719 0.66 0.488964
Target:  5'- uGGCCaaGGACUGguggcACGCCcaGGCGgCAGCu -3'
miRNA:   3'- gUCGG--UCUGGC-----UGCGGa-CCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 9793 0.66 0.469458
Target:  5'- -cGCCgAGGCCcuGCGCCggUGGCACCcgacGCu -3'
miRNA:   3'- guCGG-UCUGGc-UGCGG--ACCGUGGu---CG- -5'
19115 5' -60.2 NC_004684.1 + 56490 0.66 0.479162
Target:  5'- uCGGCCuGuacgcGCCGAC-CCgggUGGuCACCGGCg -3'
miRNA:   3'- -GUCGGuC-----UGGCUGcGG---ACC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 18350 0.66 0.497865
Target:  5'- gAGCC-GACCGGCGgCgcGGUgccgcucgacaucACCGGCa -3'
miRNA:   3'- gUCGGuCUGGCUGCgGa-CCG-------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 50666 0.66 0.479162
Target:  5'- gCGGaCCAGGCguGCGCCcGGUGCCGuGCa -3'
miRNA:   3'- -GUC-GGUCUGgcUGCGGaCCGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 38244 0.66 0.49489
Target:  5'- uCGGCCAGcgcauguccccggaGCUGAuCGCCgaaauucaggccgUGGCucCCAGCg -3'
miRNA:   3'- -GUCGGUC--------------UGGCU-GCGG-------------ACCGu-GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 54799 0.66 0.479162
Target:  5'- -cGCCAGgaGCCGAUGacCCUGGCugaguucgACCGGg -3'
miRNA:   3'- guCGGUC--UGGCUGC--GGACCG--------UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 35692 0.66 0.505837
Target:  5'- -cGCCGGACCcggucaccaugaucGACGgugaccugaCCUGGUucaacaacACCAGCg -3'
miRNA:   3'- guCGGUCUGG--------------CUGC---------GGACCG--------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 62600 0.66 0.479162
Target:  5'- gCGGUCGGccACCG-CGCCgaGGCGCUugcuGGCg -3'
miRNA:   3'- -GUCGGUC--UGGCuGCGGa-CCGUGG----UCG- -5'
19115 5' -60.2 NC_004684.1 + 33091 0.66 0.488964
Target:  5'- cCGGCguGgcgcuGCCGACGCa-GGCGCUcGCg -3'
miRNA:   3'- -GUCGguC-----UGGCUGCGgaCCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 64371 0.66 0.469458
Target:  5'- gCGGUCAGcuCCauGugGUCcGGCAUCAGCa -3'
miRNA:   3'- -GUCGGUCu-GG--CugCGGaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 1565 0.66 0.479162
Target:  5'- -cGCCugcuGAUgGuGCGCCUGucugcgcugaGCGCCAGCg -3'
miRNA:   3'- guCGGu---CUGgC-UGCGGAC----------CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41078 0.66 0.518907
Target:  5'- uCGG-CGGcCCGGCgGCCUGGC-CgAGCu -3'
miRNA:   3'- -GUCgGUCuGGCUG-CGGACCGuGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 33190 0.66 0.508841
Target:  5'- aGGUCGucACCGugGCCaUGGCGacggacagcCCGGCg -3'
miRNA:   3'- gUCGGUc-UGGCugCGG-ACCGU---------GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 36519 0.66 0.469458
Target:  5'- gAGCCuGGGCaCGGCGUUcGGgAUCAGCg -3'
miRNA:   3'- gUCGG-UCUG-GCUGCGGaCCgUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.