Results 21 - 40 of 313 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 5687 | 0.66 | 0.469458 |
Target: 5'- uGGCCGGGgcCCGGCcuGCCcacGGCACCGacGCc -3' miRNA: 3'- gUCGGUCU--GGCUG--CGGa--CCGUGGU--CG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 33091 | 0.66 | 0.488964 |
Target: 5'- cCGGCguGgcgcuGCCGACGCa-GGCGCUcGCg -3' miRNA: 3'- -GUCGguC-----UGGCUGCGgaCCGUGGuCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 18350 | 0.66 | 0.497865 |
Target: 5'- gAGCC-GACCGGCGgCgcGGUgccgcucgacaucACCGGCa -3' miRNA: 3'- gUCGGuCUGGCUGCgGa-CCG-------------UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 1565 | 0.66 | 0.479162 |
Target: 5'- -cGCCugcuGAUgGuGCGCCUGucugcgcugaGCGCCAGCg -3' miRNA: 3'- guCGGu---CUGgC-UGCGGAC----------CGUGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 50666 | 0.66 | 0.479162 |
Target: 5'- gCGGaCCAGGCguGCGCCcGGUGCCGuGCa -3' miRNA: 3'- -GUC-GGUCUGgcUGCGGaCCGUGGU-CG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 26815 | 0.66 | 0.487979 |
Target: 5'- gGGCCGGuugaugaacgacACCaGCGCgCUGGUggaccggucgagcACCAGCg -3' miRNA: 3'- gUCGGUC------------UGGcUGCG-GACCG-------------UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 54799 | 0.66 | 0.479162 |
Target: 5'- -cGCCAGgaGCCGAUGacCCUGGCugaguucgACCGGg -3' miRNA: 3'- guCGGUC--UGGCUGC--GGACCG--------UGGUCg -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 9227 | 0.66 | 0.519917 |
Target: 5'- gGGCCAGgacccgaaccugcuGCCGACGC-UGGCggugcucauccccgaGCUGGCc -3' miRNA: 3'- gUCGGUC--------------UGGCUGCGgACCG---------------UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 9793 | 0.66 | 0.469458 |
Target: 5'- -cGCCgAGGCCcuGCGCCggUGGCACCcgacGCu -3' miRNA: 3'- guCGG-UCUGGc-UGCGG--ACCGUGGu---CG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 36519 | 0.66 | 0.469458 |
Target: 5'- gAGCCuGGGCaCGGCGUUcGGgAUCAGCg -3' miRNA: 3'- gUCGG-UCUG-GCUGCGGaCCgUGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 18569 | 0.66 | 0.511852 |
Target: 5'- gCGGCCgaggucaAGACCG-CGCUgguggcucuggacgaUGGCuuugagGCCAGCg -3' miRNA: 3'- -GUCGG-------UCUGGCuGCGG---------------ACCG------UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 56490 | 0.66 | 0.479162 |
Target: 5'- uCGGCCuGuacgcGCCGAC-CCgggUGGuCACCGGCg -3' miRNA: 3'- -GUCGGuC-----UGGCUGcGG---ACC-GUGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 57570 | 0.66 | 0.469458 |
Target: 5'- aCGGCaAGACgGugGCCUugagcgucgGGUgccACCGGCg -3' miRNA: 3'- -GUCGgUCUGgCugCGGA---------CCG---UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 34285 | 0.66 | 0.469458 |
Target: 5'- uGGCCAG-CgCGAgCGCCUGcGuCGgCAGCg -3' miRNA: 3'- gUCGGUCuG-GCU-GCGGAC-C-GUgGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 15263 | 0.66 | 0.518907 |
Target: 5'- uGGCCuGGCCaACacCCUGGUggccACCAGCc -3' miRNA: 3'- gUCGGuCUGGcUGc-GGACCG----UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 62600 | 0.66 | 0.479162 |
Target: 5'- gCGGUCGGccACCG-CGCCgaGGCGCUugcuGGCg -3' miRNA: 3'- -GUCGGUC--UGGCuGCGGa-CCGUGG----UCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 25339 | 0.66 | 0.518907 |
Target: 5'- gCGGCCuccCCgGugGCCuUGGCGgCGGCc -3' miRNA: 3'- -GUCGGucuGG-CugCGG-ACCGUgGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 56593 | 0.66 | 0.478188 |
Target: 5'- -cGCCGGaugccgcuacgguGCCGACGCCgucgcgGGUgucGCgGGCa -3' miRNA: 3'- guCGGUC-------------UGGCUGCGGa-----CCG---UGgUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 23502 | 0.66 | 0.479162 |
Target: 5'- uGGCCuGGaaGACGCUguccGGCgucACCAGCc -3' miRNA: 3'- gUCGGuCUggCUGCGGa---CCG---UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 37609 | 0.66 | 0.508841 |
Target: 5'- gGGCCcGGCCGcccaugccgaACGCCgucgGuGCGCUGGCc -3' miRNA: 3'- gUCGGuCUGGC----------UGCGGa---C-CGUGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home