miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 53985 0.66 0.478188
Target:  5'- gAGCaGGGCCGAcaCGUCcGGCucaaucgGCCAGCg -3'
miRNA:   3'- gUCGgUCUGGCU--GCGGaCCG-------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 23713 0.66 0.508841
Target:  5'- -uGUCGGACCucGACGCCgugugGGCugaguuCCAGg -3'
miRNA:   3'- guCGGUCUGG--CUGCGGa----CCGu-----GGUCg -5'
19115 5' -60.2 NC_004684.1 + 34285 0.66 0.469458
Target:  5'- uGGCCAG-CgCGAgCGCCUGcGuCGgCAGCg -3'
miRNA:   3'- gUCGGUCuG-GCU-GCGGAC-C-GUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 19618 0.66 0.479162
Target:  5'- uGGCC-GACUGACGCacuaccgggGGCGcguCCGGCc -3'
miRNA:   3'- gUCGGuCUGGCUGCGga-------CCGU---GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 314 0.66 0.508841
Target:  5'- -cGCCgAGGCCaACGCCc-GCACCGGg -3'
miRNA:   3'- guCGG-UCUGGcUGCGGacCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 43847 0.66 0.479162
Target:  5'- aGGCCGcGACCGAUGCCgccgagguUGGUgaGCaGGCu -3'
miRNA:   3'- gUCGGU-CUGGCUGCGG--------ACCG--UGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 16080 0.66 0.479162
Target:  5'- uGGCCGguGACCGGgaguuCCUGGCACCGu- -3'
miRNA:   3'- gUCGGU--CUGGCUgc---GGACCGUGGUcg -5'
19115 5' -60.2 NC_004684.1 + 9227 0.66 0.519917
Target:  5'- gGGCCAGgacccgaaccugcuGCCGACGC-UGGCggugcucauccccgaGCUGGCc -3'
miRNA:   3'- gUCGGUC--------------UGGCUGCGgACCG---------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 6788 0.66 0.488964
Target:  5'- -cGCCGgguGACCG--GCCUGcGCACCGuGCg -3'
miRNA:   3'- guCGGU---CUGGCugCGGAC-CGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 5687 0.66 0.469458
Target:  5'- uGGCCGGGgcCCGGCcuGCCcacGGCACCGacGCc -3'
miRNA:   3'- gUCGGUCU--GGCUG--CGGa--CCGUGGU--CG- -5'
19115 5' -60.2 NC_004684.1 + 56490 0.66 0.479162
Target:  5'- uCGGCCuGuacgcGCCGAC-CCgggUGGuCACCGGCg -3'
miRNA:   3'- -GUCGGuC-----UGGCUGcGG---ACC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15753 0.66 0.508841
Target:  5'- aCGGCCAGcaGCUG-CGCagcGGCACCuaucGCg -3'
miRNA:   3'- -GUCGGUC--UGGCuGCGga-CCGUGGu---CG- -5'
19115 5' -60.2 NC_004684.1 + 15263 0.66 0.518907
Target:  5'- uGGCCuGGCCaACacCCUGGUggccACCAGCc -3'
miRNA:   3'- gUCGGuCUGGcUGc-GGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 25339 0.66 0.518907
Target:  5'- gCGGCCuccCCgGugGCCuUGGCGgCGGCc -3'
miRNA:   3'- -GUCGGucuGG-CugCGG-ACCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 62600 0.66 0.479162
Target:  5'- gCGGUCGGccACCG-CGCCgaGGCGCUugcuGGCg -3'
miRNA:   3'- -GUCGGUC--UGGCuGCGGa-CCGUGG----UCG- -5'
19115 5' -60.2 NC_004684.1 + 54229 0.66 0.492911
Target:  5'- uCGGCCAGcagcuguuccagggcACCG-CGCCgGGacagcuccucaGCCAGCg -3'
miRNA:   3'- -GUCGGUC---------------UGGCuGCGGaCCg----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 65905 0.66 0.508841
Target:  5'- uGGCCAccagGGCCGcCGCaccgGGCAcguCCGGCc -3'
miRNA:   3'- gUCGGU----CUGGCuGCGga--CCGU---GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 37609 0.66 0.508841
Target:  5'- gGGCCcGGCCGcccaugccgaACGCCgucgGuGCGCUGGCc -3'
miRNA:   3'- gUCGGuCUGGC----------UGCGGa---C-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 18350 0.66 0.497865
Target:  5'- gAGCC-GACCGGCGgCgcGGUgccgcucgacaucACCGGCa -3'
miRNA:   3'- gUCGGuCUGGCUGCgGa-CCG-------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 44957 0.66 0.478188
Target:  5'- -cGCCGcGCCGACGgCgaUGGCGuugaggcCCAGCg -3'
miRNA:   3'- guCGGUcUGGCUGCgG--ACCGU-------GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.