miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 28435 0.66 0.479162
Target:  5'- --cUCGGugCGGUGCUUGGUGCCGGUg -3'
miRNA:   3'- gucGGUCugGCUGCGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 34050 0.66 0.479162
Target:  5'- aGGCCGGACUGcAC-CgaGGUgGCCAGCg -3'
miRNA:   3'- gUCGGUCUGGC-UGcGgaCCG-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 43134 0.66 0.488964
Target:  5'- uGGCgAG-CUGGCGCaccucuuccUUGGCACCgAGCa -3'
miRNA:   3'- gUCGgUCuGGCUGCG---------GACCGUGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 15137 0.66 0.488964
Target:  5'- -cGCCAGcuucgacguACCGcCGCUgUGGCACCacGGCc -3'
miRNA:   3'- guCGGUC---------UGGCuGCGG-ACCGUGG--UCG- -5'
19115 5' -60.2 NC_004684.1 + 57570 0.66 0.469458
Target:  5'- aCGGCaAGACgGugGCCUugagcgucgGGUgccACCGGCg -3'
miRNA:   3'- -GUCGgUCUGgCugCGGA---------CCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 10240 0.66 0.508841
Target:  5'- uCGGCC--ACCGcCGCCaUGGaggcgaACCAGCc -3'
miRNA:   3'- -GUCGGucUGGCuGCGG-ACCg-----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 5627 0.66 0.518907
Target:  5'- -uGCUGGAgCugGACGCCUGGUucGCCcguGGCg -3'
miRNA:   3'- guCGGUCUgG--CUGCGGACCG--UGG---UCG- -5'
19115 5' -60.2 NC_004684.1 + 16080 0.66 0.479162
Target:  5'- uGGCCGguGACCGGgaguuCCUGGCACCGu- -3'
miRNA:   3'- gUCGGU--CUGGCUgc---GGACCGUGGUcg -5'
19115 5' -60.2 NC_004684.1 + 26049 0.67 0.462725
Target:  5'- gCGGCCAGGgCGGCGaguucgaggccaacaCCUcGGCGuacgacuCCAGCg -3'
miRNA:   3'- -GUCGGUCUgGCUGC---------------GGA-CCGU-------GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 59757 0.67 0.459856
Target:  5'- gAGCguGACCcagaugcuGACGCaccacgGGCACCGGa -3'
miRNA:   3'- gUCGguCUGG--------CUGCGga----CCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 65794 0.67 0.413488
Target:  5'- aCGGC--GACCGAUGCC-GuGCACCGGg -3'
miRNA:   3'- -GUCGguCUGGCUGCGGaC-CGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 52527 0.67 0.431693
Target:  5'- aAGCCGGugUGGagccaggaggUGUCcGGCACCGGUu -3'
miRNA:   3'- gUCGGUCugGCU----------GCGGaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 44863 0.67 0.459856
Target:  5'- cCGGgCAGAgCGAgGCCUGccuGCGUCAGCu -3'
miRNA:   3'- -GUCgGUCUgGCUgCGGAC---CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 13989 0.67 0.440969
Target:  5'- aGGCCAGcCCGGCcaCCUGGaCACgGuGCa -3'
miRNA:   3'- gUCGGUCuGGCUGc-GGACC-GUGgU-CG- -5'
19115 5' -60.2 NC_004684.1 + 11155 0.67 0.440969
Target:  5'- -cGCCGu-CgGugGaCCUGGcCGCCAGCg -3'
miRNA:   3'- guCGGUcuGgCugC-GGACC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 24003 0.67 0.440969
Target:  5'- aGGCCAGcaguucGCCGACGUgaucGGUuCCGGCa -3'
miRNA:   3'- gUCGGUC------UGGCUGCGga--CCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 20295 0.67 0.459856
Target:  5'- cCAGCgAGaagugcGCCGACaCCaUGGCGgCGGCg -3'
miRNA:   3'- -GUCGgUC------UGGCUGcGG-ACCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 26354 0.67 0.440969
Target:  5'- uCGGCCAuuCCGucGgGCaacGGCACCGGCa -3'
miRNA:   3'- -GUCGGUcuGGC--UgCGga-CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 62913 0.67 0.459856
Target:  5'- gGGCCAGGCCcugGCC-GGUgacgaagccgACCAGCg -3'
miRNA:   3'- gUCGGUCUGGcugCGGaCCG----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 65959 0.67 0.459856
Target:  5'- cCAGCUcGGCCugGAC-CUUGGC-CCGGCa -3'
miRNA:   3'- -GUCGGuCUGG--CUGcGGACCGuGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.