miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 15055 0.67 0.440969
Target:  5'- -uGCUGGAuCCGAUucgcugGCCUGcGCACCGcGCa -3'
miRNA:   3'- guCGGUCU-GGCUG------CGGAC-CGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 53411 0.67 0.459856
Target:  5'- uGGCCGGGCUG--GCCU-GCGCCGcGCg -3'
miRNA:   3'- gUCGGUCUGGCugCGGAcCGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 8322 0.67 0.459856
Target:  5'- gAGCUAcuGGCUGAC-CCUGGCcCUGGCc -3'
miRNA:   3'- gUCGGU--CUGGCUGcGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 62913 0.67 0.459856
Target:  5'- gGGCCAGGCCcugGCC-GGUgacgaagccgACCAGCg -3'
miRNA:   3'- gUCGGUCUGGcugCGGaCCG----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58449 0.67 0.450358
Target:  5'- -uGCCGGAcCCGACuGCCc-GCugagGCCAGCg -3'
miRNA:   3'- guCGGUCU-GGCUG-CGGacCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 27167 0.67 0.450358
Target:  5'- cCAGCUAcGgCGGCGaCCUGGC-CaCGGCg -3'
miRNA:   3'- -GUCGGUcUgGCUGC-GGACCGuG-GUCG- -5'
19115 5' -60.2 NC_004684.1 + 9870 0.67 0.450358
Target:  5'- -cGCCGGAucCCGACGCC--GCGCaggAGCa -3'
miRNA:   3'- guCGGUCU--GGCUGCGGacCGUGg--UCG- -5'
19115 5' -60.2 NC_004684.1 + 531 0.67 0.450358
Target:  5'- aGGCCuGGAcCCGGCgaaagGCCUggagGGCACCGGg -3'
miRNA:   3'- gUCGG-UCU-GGCUG-----CGGA----CCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 14490 0.67 0.450358
Target:  5'- -uGCCGGuACC-ACGCC-GGuCGCCGGUg -3'
miRNA:   3'- guCGGUC-UGGcUGCGGaCC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 25196 0.67 0.450358
Target:  5'- uGGCCAGgcGCUGGCaCCgggUGGCuucACCGGCa -3'
miRNA:   3'- gUCGGUC--UGGCUGcGG---ACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 26987 0.67 0.440969
Target:  5'- aGGCCGGugCGAgCGCggcgGGCG-CGGCg -3'
miRNA:   3'- gUCGGUCugGCU-GCGga--CCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 695 0.67 0.432615
Target:  5'- gCAGCgcaAGACCGcCGCCgggugggaagaccugGGCACC-GCc -3'
miRNA:   3'- -GUCGg--UCUGGCuGCGGa--------------CCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 11162 0.67 0.450358
Target:  5'- -uGCgCAGGCUGAcCGCCUGcauGCGCC-GCu -3'
miRNA:   3'- guCG-GUCUGGCU-GCGGAC---CGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 56991 0.67 0.440969
Target:  5'- uGGCguGguucugcacGCUGGCgGCCUGGUACCcGGCg -3'
miRNA:   3'- gUCGguC---------UGGCUG-CGGACCGUGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 11108 0.67 0.440969
Target:  5'- gGGCCGGGCUGAUGCCUuGGaUGCgC-GCg -3'
miRNA:   3'- gUCGGUCUGGCUGCGGA-CC-GUG-GuCG- -5'
19115 5' -60.2 NC_004684.1 + 11155 0.67 0.440969
Target:  5'- -cGCCGu-CgGugGaCCUGGcCGCCAGCg -3'
miRNA:   3'- guCGGUcuGgCugC-GGACC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 13989 0.67 0.440969
Target:  5'- aGGCCAGcCCGGCcaCCUGGaCACgGuGCa -3'
miRNA:   3'- gUCGGUCuGGCUGc-GGACC-GUGgU-CG- -5'
19115 5' -60.2 NC_004684.1 + 42679 0.67 0.440969
Target:  5'- cCAGCuCGGuguugucgucGCUGACGCCUGGaauggUCGGCa -3'
miRNA:   3'- -GUCG-GUC----------UGGCUGCGGACCgu---GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 25167 0.67 0.458901
Target:  5'- -cGCCGGugccgacACCGGCgGCCacgucGGCcACCAGCu -3'
miRNA:   3'- guCGGUC-------UGGCUG-CGGa----CCG-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 3821 0.67 0.459856
Target:  5'- -cGCgCAGGCCGAUGgaCCugaUGGCAgCGGCc -3'
miRNA:   3'- guCG-GUCUGGCUGC--GG---ACCGUgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.