Results 41 - 60 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 30498 | 0.73 | 0.196776 |
Target: 5'- cCGGCCAGuCCGAgcugguUGCCgaccacGGcCACCAGCa -3' miRNA: 3'- -GUCGGUCuGGCU------GCGGa-----CC-GUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 46292 | 0.72 | 0.229188 |
Target: 5'- gCGGCCGaGCgcguugCGGCGCUUGGCgugcGCCAGCg -3' miRNA: 3'- -GUCGGUcUG------GCUGCGGACCG----UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 42208 | 0.72 | 0.223489 |
Target: 5'- gAGCUgguGGCCGAcguggcCGCCggugucGGCACCGGCg -3' miRNA: 3'- gUCGGu--CUGGCU------GCGGa-----CCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 1638 | 0.72 | 0.21791 |
Target: 5'- gCAaCCGGguACCGGCGCCcaagUGGgGCCAGCu -3' miRNA: 3'- -GUcGGUC--UGGCUGCGG----ACCgUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 17335 | 0.72 | 0.226894 |
Target: 5'- gCAGCUcGACCGGuuccuggccuggaGCCaGGCACCGGCc -3' miRNA: 3'- -GUCGGuCUGGCUg------------CGGaCCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 18857 | 0.72 | 0.21791 |
Target: 5'- uGGUCGguGACCggGugGCCgcacucagGGCACCAGCg -3' miRNA: 3'- gUCGGU--CUGG--CugCGGa-------CCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 47649 | 0.72 | 0.206583 |
Target: 5'- aCGGCCAGugCGGCG-UUGGCcgccuugAUCAGCg -3' miRNA: 3'- -GUCGGUCugGCUGCgGACCG-------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 6026 | 0.72 | 0.201886 |
Target: 5'- uGGCCuuuAGGCCGccaGCGCCUcgcGGC-CCAGCu -3' miRNA: 3'- gUCGG---UCUGGC---UGCGGA---CCGuGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 23690 | 0.72 | 0.229188 |
Target: 5'- cCGGaCCAGAgCGugGCCUccaaccugGGCGgCGGCg -3' miRNA: 3'- -GUC-GGUCUgGCugCGGA--------CCGUgGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 47144 | 0.72 | 0.227465 |
Target: 5'- -cGCCGGGCCGgaaguaguaccggcGCGCCaGGCGCacccaGGCg -3' miRNA: 3'- guCGGUCUGGC--------------UGCGGaCCGUGg----UCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 20036 | 0.72 | 0.201886 |
Target: 5'- -cGCCGGguccuACCGugGCCUGGUGgCCAuGCu -3' miRNA: 3'- guCGGUC-----UGGCugCGGACCGU-GGU-CG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 61449 | 0.72 | 0.223489 |
Target: 5'- gCGGCCAGGuuGGacCGCCcGGUgGCCAGCg -3' miRNA: 3'- -GUCGGUCUggCU--GCGGaCCG-UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 10624 | 0.72 | 0.214621 |
Target: 5'- cCAGCCGucggcgucgucaccACCGugGUCUGGUGCCGGUu -3' miRNA: 3'- -GUCGGUc-------------UGGCugCGGACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 47833 | 0.72 | 0.212451 |
Target: 5'- -cGCCAGGCcCGGaGaCCUGGCACCgcccGGCg -3' miRNA: 3'- guCGGUCUG-GCUgC-GGACCGUGG----UCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 18159 | 0.72 | 0.21791 |
Target: 5'- gGGCgAcguGCCGACGCCcGGC-CCGGCa -3' miRNA: 3'- gUCGgUc--UGGCUGCGGaCCGuGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 19313 | 0.72 | 0.20711 |
Target: 5'- -uGCCcGGCCGACGCC-GGaACCGGUg -3' miRNA: 3'- guCGGuCUGGCUGCGGaCCgUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 35057 | 0.72 | 0.228613 |
Target: 5'- cCAGCguGAUCGuCGCCgaauggucguuggUGuGCACCGGCg -3' miRNA: 3'- -GUCGguCUGGCuGCGG-------------AC-CGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 1370 | 0.72 | 0.228038 |
Target: 5'- -cGCCAacacccuGGCCGACGCCaaGGCcgccguugcacugGCCAGCg -3' miRNA: 3'- guCGGU-------CUGGCUGCGGa-CCG-------------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 34726 | 0.72 | 0.222925 |
Target: 5'- gUAGCCAuGCCGcCGCCaGGCcuugccaACCGGCa -3' miRNA: 3'- -GUCGGUcUGGCuGCGGaCCG-------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 9372 | 0.71 | 0.247025 |
Target: 5'- gAGCCGGACaccgaggaCGACGCC-GGUACCgacgacAGCg -3' miRNA: 3'- gUCGGUCUG--------GCUGCGGaCCGUGG------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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