Results 1 - 20 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 2627 | 1.11 | 0.000306 |
Target: 5'- aCAGCCAGACCGACGCCUGGCACCAGCu -3' miRNA: 3'- -GUCGGUCUGGCUGCGGACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 45335 | 0.87 | 0.01946 |
Target: 5'- gUAGCCAGACUG-UGCCUGGCGCUGGCu -3' miRNA: 3'- -GUCGGUCUGGCuGCGGACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 1916 | 0.81 | 0.049279 |
Target: 5'- -uGCCGGAcCCGGCcugccggGCCUGGUACCGGCg -3' miRNA: 3'- guCGGUCU-GGCUG-------CGGACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 12526 | 0.8 | 0.056824 |
Target: 5'- gGGCCAcGACCGuggcagcaaACGCCUGGUugcuGCCAGCg -3' miRNA: 3'- gUCGGU-CUGGC---------UGCGGACCG----UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 50332 | 0.8 | 0.058429 |
Target: 5'- cCGGCCAGGCgGGCgGCCuccuUGGCAUCGGCa -3' miRNA: 3'- -GUCGGUCUGgCUG-CGG----ACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 50033 | 0.79 | 0.072952 |
Target: 5'- gCAGCguGGCCGGUGCCUGGCuCCAGg -3' miRNA: 3'- -GUCGguCUGGCUGCGGACCGuGGUCg -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 18278 | 0.78 | 0.083728 |
Target: 5'- --uCCAGGCCGACGCCgacggcgaccugUGGCACCuGCc -3' miRNA: 3'- gucGGUCUGGCUGCGG------------ACCGUGGuCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 29795 | 0.77 | 0.098665 |
Target: 5'- gCGGCCGGgcccgcacgguACCGAUGCCgGGCACCuccAGCu -3' miRNA: 3'- -GUCGGUC-----------UGGCUGCGGaCCGUGG---UCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 11926 | 0.77 | 0.101388 |
Target: 5'- aCAGCCAGggccguccGCUGGCcauggucgccaGCCUGGCACCuGCg -3' miRNA: 3'- -GUCGGUC--------UGGCUG-----------CGGACCGUGGuCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 11929 | 0.77 | 0.104181 |
Target: 5'- uCGGCCAGGCCuucaccGCGCUUGGCgacauagaccACCGGCg -3' miRNA: 3'- -GUCGGUCUGGc-----UGCGGACCG----------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 7702 | 0.76 | 0.109987 |
Target: 5'- --uCCAGGCCGuCGCCgUGGCGCUGGCc -3' miRNA: 3'- gucGGUCUGGCuGCGG-ACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 51185 | 0.76 | 0.116094 |
Target: 5'- gGGCCauGGACCGcGCGcCCUGGCcguacaucgugGCCAGCa -3' miRNA: 3'- gUCGG--UCUGGC-UGC-GGACCG-----------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 41671 | 0.76 | 0.119265 |
Target: 5'- aGGCCGGGCCGAC-CUcGGCAacacCCAGCg -3' miRNA: 3'- gUCGGUCUGGCUGcGGaCCGU----GGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 21778 | 0.76 | 0.122517 |
Target: 5'- cCGGCaAGACCGACGCgCUGGUGCUGGa -3' miRNA: 3'- -GUCGgUCUGGCUGCG-GACCGUGGUCg -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 55943 | 0.75 | 0.129268 |
Target: 5'- gGGCgAGGCCGACGCCgacgccGcGCuCCAGCg -3' miRNA: 3'- gUCGgUCUGGCUGCGGa-----C-CGuGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 13252 | 0.75 | 0.132771 |
Target: 5'- uGGCCAGGCCGugaccgccaGCGCgCUGGUggccGCCGGUg -3' miRNA: 3'- gUCGGUCUGGC---------UGCG-GACCG----UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 10727 | 0.75 | 0.132771 |
Target: 5'- gCAGCCAGGCCGACGagauCgagcGGCGCaAGCg -3' miRNA: 3'- -GUCGGUCUGGCUGCg---Ga---CCGUGgUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 59952 | 0.75 | 0.135999 |
Target: 5'- cCAGCCAG-UCGGCgaaacgggucaguGCCUGGUagcGCCAGCg -3' miRNA: 3'- -GUCGGUCuGGCUG-------------CGGACCG---UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 64209 | 0.75 | 0.136362 |
Target: 5'- -uGCCGGAUCGACaCCUGGgACaCGGCg -3' miRNA: 3'- guCGGUCUGGCUGcGGACCgUG-GUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 21899 | 0.75 | 0.143812 |
Target: 5'- gCAGCCuuGugCGAUaGCCUGGC-CCGGUg -3' miRNA: 3'- -GUCGGu-CugGCUG-CGGACCGuGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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