miRNA display CGI


Results 21 - 40 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 21899 0.75 0.143812
Target:  5'- gCAGCCuuGugCGAUaGCCUGGC-CCGGUg -3'
miRNA:   3'- -GUCGGu-CugGCUG-CGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 26550 0.74 0.151632
Target:  5'- aGGCCGGGguguacgcguuCCGGCGCgccCUGGCGCgCGGCg -3'
miRNA:   3'- gUCGGUCU-----------GGCUGCG---GACCGUG-GUCG- -5'
19115 5' -60.2 NC_004684.1 + 27322 0.74 0.159836
Target:  5'- gCGGCCAGcuuugacgacgGCgGuauCGCCgugGGCACCGGCa -3'
miRNA:   3'- -GUCGGUC-----------UGgCu--GCGGa--CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15006 0.74 0.164087
Target:  5'- -uGCCuGACCGcCGCCUGG-AUCGGCu -3'
miRNA:   3'- guCGGuCUGGCuGCGGACCgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15684 0.74 0.167999
Target:  5'- uGGCCAGcggcggcACCGACGCCaccGGCAUCGuGCu -3'
miRNA:   3'- gUCGGUC-------UGGCUGCGGa--CCGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 50791 0.74 0.170208
Target:  5'- gCGGUCGGugCGcaacaugaagucgucGCGCUUGGC-CCAGCg -3'
miRNA:   3'- -GUCGGUCugGC---------------UGCGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58943 0.73 0.172444
Target:  5'- aCAGCCAGGCCuuGCGCCgGGCccuguccGCCgAGCu -3'
miRNA:   3'- -GUCGGUCUGGc-UGCGGaCCG-------UGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 55751 0.73 0.176993
Target:  5'- uGGCguGGCCGAUGCCgacGGUcaggcggccgacgGCCAGCu -3'
miRNA:   3'- gUCGguCUGGCUGCGGa--CCG-------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 42267 0.73 0.177454
Target:  5'- gAGCaAGACCGACaCCUgGGCAauCCAGCa -3'
miRNA:   3'- gUCGgUCUGGCUGcGGA-CCGU--GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 14296 0.73 0.18212
Target:  5'- uGGCCuugcAGGCCGccgcgcagguguACGCC-GGUACCAGCg -3'
miRNA:   3'- gUCGG----UCUGGC------------UGCGGaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 51814 0.73 0.18212
Target:  5'- aCGGCCAGGCCGcGCGCgCU-GCGCUggAGCa -3'
miRNA:   3'- -GUCGGUCUGGC-UGCG-GAcCGUGG--UCG- -5'
19115 5' -60.2 NC_004684.1 + 46746 0.73 0.185451
Target:  5'- -cGCCGGACCucuggggucagcucGACGCgCUGGCGCUcGCc -3'
miRNA:   3'- guCGGUCUGG--------------CUGCG-GACCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 41891 0.73 0.186895
Target:  5'- aCAGCCGcucGCCGGuCGCCUGGCcCUGGUg -3'
miRNA:   3'- -GUCGGUc--UGGCU-GCGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61542 0.73 0.186895
Target:  5'- -uGCCAG-UCGcACGCCUGGUccucgaacaccGCCAGCu -3'
miRNA:   3'- guCGGUCuGGC-UGCGGACCG-----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58166 0.73 0.186895
Target:  5'- gAGCCGGugCGACuguGCCgc-CACCAGCa -3'
miRNA:   3'- gUCGGUCugGCUG---CGGaccGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 40938 0.73 0.186895
Target:  5'- gCGGCCAGGCgUGcCGCCguacaccgGGCcACCGGCg -3'
miRNA:   3'- -GUCGGUCUG-GCuGCGGa-------CCG-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 31128 0.73 0.190303
Target:  5'- uGGCCAGGCCGcCGgacaccucauagcuCUUGGCcacGCCAGCg -3'
miRNA:   3'- gUCGGUCUGGCuGC--------------GGACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 25788 0.73 0.19178
Target:  5'- -cGCCGGACuCGugGCCgaccuGCGCCAGg -3'
miRNA:   3'- guCGGUCUG-GCugCGGac---CGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 61409 0.73 0.19178
Target:  5'- gAGCCAGGCCGGgacuuCGCUcGGCcggucgcucACCGGCg -3'
miRNA:   3'- gUCGGUCUGGCU-----GCGGaCCG---------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 47707 0.73 0.19178
Target:  5'- uCGGCCAGGCCu-UGCCgccGCGCCGGUa -3'
miRNA:   3'- -GUCGGUCUGGcuGCGGac-CGUGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.