miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 30498 0.73 0.196776
Target:  5'- cCGGCCAGuCCGAgcugguUGCCgaccacGGcCACCAGCa -3'
miRNA:   3'- -GUCGGUCuGGCU------GCGGa-----CC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 20036 0.72 0.201886
Target:  5'- -cGCCGGguccuACCGugGCCUGGUGgCCAuGCu -3'
miRNA:   3'- guCGGUC-----UGGCugCGGACCGU-GGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 6026 0.72 0.201886
Target:  5'- uGGCCuuuAGGCCGccaGCGCCUcgcGGC-CCAGCu -3'
miRNA:   3'- gUCGG---UCUGGC---UGCGGA---CCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 47649 0.72 0.206583
Target:  5'- aCGGCCAGugCGGCG-UUGGCcgccuugAUCAGCg -3'
miRNA:   3'- -GUCGGUCugGCUGCgGACCG-------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 19313 0.72 0.20711
Target:  5'- -uGCCcGGCCGACGCC-GGaACCGGUg -3'
miRNA:   3'- guCGGuCUGGCUGCGGaCCgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 47833 0.72 0.212451
Target:  5'- -cGCCAGGCcCGGaGaCCUGGCACCgcccGGCg -3'
miRNA:   3'- guCGGUCUG-GCUgC-GGACCGUGG----UCG- -5'
19115 5' -60.2 NC_004684.1 + 10624 0.72 0.214621
Target:  5'- cCAGCCGucggcgucgucaccACCGugGUCUGGUGCCGGUu -3'
miRNA:   3'- -GUCGGUc-------------UGGCugCGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 1638 0.72 0.21791
Target:  5'- gCAaCCGGguACCGGCGCCcaagUGGgGCCAGCu -3'
miRNA:   3'- -GUcGGUC--UGGCUGCGG----ACCgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 18857 0.72 0.21791
Target:  5'- uGGUCGguGACCggGugGCCgcacucagGGCACCAGCg -3'
miRNA:   3'- gUCGGU--CUGG--CugCGGa-------CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 18159 0.72 0.21791
Target:  5'- gGGCgAcguGCCGACGCCcGGC-CCGGCa -3'
miRNA:   3'- gUCGgUc--UGGCUGCGGaCCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 34726 0.72 0.222925
Target:  5'- gUAGCCAuGCCGcCGCCaGGCcuugccaACCGGCa -3'
miRNA:   3'- -GUCGGUcUGGCuGCGGaCCG-------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61449 0.72 0.223489
Target:  5'- gCGGCCAGGuuGGacCGCCcGGUgGCCAGCg -3'
miRNA:   3'- -GUCGGUCUggCU--GCGGaCCG-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 42208 0.72 0.223489
Target:  5'- gAGCUgguGGCCGAcguggcCGCCggugucGGCACCGGCg -3'
miRNA:   3'- gUCGGu--CUGGCU------GCGGa-----CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 17335 0.72 0.226894
Target:  5'- gCAGCUcGACCGGuuccuggccuggaGCCaGGCACCGGCc -3'
miRNA:   3'- -GUCGGuCUGGCUg------------CGGaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 47144 0.72 0.227465
Target:  5'- -cGCCGGGCCGgaaguaguaccggcGCGCCaGGCGCacccaGGCg -3'
miRNA:   3'- guCGGUCUGGC--------------UGCGGaCCGUGg----UCG- -5'
19115 5' -60.2 NC_004684.1 + 1370 0.72 0.228038
Target:  5'- -cGCCAacacccuGGCCGACGCCaaGGCcgccguugcacugGCCAGCg -3'
miRNA:   3'- guCGGU-------CUGGCUGCGGa-CCG-------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 35057 0.72 0.228613
Target:  5'- cCAGCguGAUCGuCGCCgaauggucguuggUGuGCACCGGCg -3'
miRNA:   3'- -GUCGguCUGGCuGCGG-------------AC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 46292 0.72 0.229188
Target:  5'- gCGGCCGaGCgcguugCGGCGCUUGGCgugcGCCAGCg -3'
miRNA:   3'- -GUCGGUcUG------GCUGCGGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 23690 0.72 0.229188
Target:  5'- cCGGaCCAGAgCGugGCCUccaaccugGGCGgCGGCg -3'
miRNA:   3'- -GUC-GGUCUgGCugCGGA--------CCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 202 0.71 0.23501
Target:  5'- aCGGCgAGACCGugacccgcACGUCcGGCACCAuGCc -3'
miRNA:   3'- -GUCGgUCUGGC--------UGCGGaCCGUGGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.