miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 40633 0.71 0.265997
Target:  5'- -cGCCGcgcGGCCGACgaacuuggggGCCUGGCcccGCCAGUc -3'
miRNA:   3'- guCGGU---CUGGCUG----------CGGACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 28908 0.71 0.265997
Target:  5'- uGGCCuuGCUGACGCC-GGUGCCuGCc -3'
miRNA:   3'- gUCGGucUGGCUGCGGaCCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 26171 0.7 0.271914
Target:  5'- aGGCCAGcagcucgcgcaccGCUGGCGUCUGGUcgccuuugAUCAGCa -3'
miRNA:   3'- gUCGGUC-------------UGGCUGCGGACCG--------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 22717 0.7 0.272578
Target:  5'- uGGCCaAGGCCGugG-CUGGCACgC-GCg -3'
miRNA:   3'- gUCGG-UCUGGCugCgGACCGUG-GuCG- -5'
19115 5' -60.2 NC_004684.1 + 9515 0.7 0.272578
Target:  5'- cCAGCCAGcACCGGuccuggcgUGCCgGGaCGCUGGCa -3'
miRNA:   3'- -GUCGGUC-UGGCU--------GCGGaCC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 18617 0.7 0.272578
Target:  5'- uCGGCCcGcCCGGCGUC-GGCAaguCCAGCg -3'
miRNA:   3'- -GUCGGuCuGGCUGCGGaCCGU---GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 30078 0.7 0.272578
Target:  5'- cCGGCCAcucACCGACGCCgaaugGGC-CC-GCa -3'
miRNA:   3'- -GUCGGUc--UGGCUGCGGa----CCGuGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 2046 0.7 0.279289
Target:  5'- uGGCCcuggGGGCCGcCaucguggccuGCCUGGCGCUGGCc -3'
miRNA:   3'- gUCGG----UCUGGCuG----------CGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 52245 0.7 0.279289
Target:  5'- gCGGCCAG-CUG-CGCgCUGGCGuggaucaggcCCAGCg -3'
miRNA:   3'- -GUCGGUCuGGCuGCG-GACCGU----------GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58248 0.7 0.279289
Target:  5'- uCGGCCAGGCCGAgcaucuUGaCCaUGGCcUCGGCg -3'
miRNA:   3'- -GUCGGUCUGGCU------GC-GG-ACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 1101 0.7 0.279289
Target:  5'- aGGCCGcGAcCCGGCGCaaCUGGCACgAGa -3'
miRNA:   3'- gUCGGU-CU-GGCUGCG--GACCGUGgUCg -5'
19115 5' -60.2 NC_004684.1 + 24646 0.7 0.286131
Target:  5'- cCGGCCAGGCCGccaaccACGuCCUGGacaugcuucaCACCGGa -3'
miRNA:   3'- -GUCGGUCUGGC------UGC-GGACC----------GUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 8856 0.7 0.286131
Target:  5'- gGGCCuGGACgUGuCGCCUGaGCGCCuGCu -3'
miRNA:   3'- gUCGG-UCUG-GCuGCGGAC-CGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 31205 0.7 0.286131
Target:  5'- gGGCCuGGaaGACGaCCUGGCcgacGCCGGUg -3'
miRNA:   3'- gUCGGuCUggCUGC-GGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41790 0.7 0.286131
Target:  5'- gCGGCCAGguGCCGACGCCgacguucuucgUGGacCACCcggaGGCg -3'
miRNA:   3'- -GUCGGUC--UGGCUGCGG-----------ACC--GUGG----UCG- -5'
19115 5' -60.2 NC_004684.1 + 55449 0.7 0.286131
Target:  5'- -uGCCAGGCUGGCGaCCaUGGC--CAGCg -3'
miRNA:   3'- guCGGUCUGGCUGC-GG-ACCGugGUCG- -5'
19115 5' -60.2 NC_004684.1 + 4217 0.7 0.293104
Target:  5'- cCAGCCAcGACUGcauGCGCCUgcgcGGCGCgCAGg -3'
miRNA:   3'- -GUCGGU-CUGGC---UGCGGA----CCGUG-GUCg -5'
19115 5' -60.2 NC_004684.1 + 24626 0.7 0.293104
Target:  5'- gCGGCCAGGCCaACGUCUacGCGuuCCGGCg -3'
miRNA:   3'- -GUCGGUCUGGcUGCGGAc-CGU--GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 63486 0.7 0.293104
Target:  5'- -cGCgAGGCCuccagcuGCGCCU-GCGCCAGCa -3'
miRNA:   3'- guCGgUCUGGc------UGCGGAcCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61495 0.7 0.293104
Target:  5'- -cGCgCAGGCggCGGCGCUcgaUGcGCGCCAGCa -3'
miRNA:   3'- guCG-GUCUG--GCUGCGG---AC-CGUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.