miRNA display CGI


Results 101 - 120 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 4217 0.7 0.293104
Target:  5'- cCAGCCAcGACUGcauGCGCCUgcgcGGCGCgCAGg -3'
miRNA:   3'- -GUCGGU-CUGGC---UGCGGA----CCGUG-GUCg -5'
19115 5' -60.2 NC_004684.1 + 23776 0.7 0.293104
Target:  5'- uCGGCCAcACCGugGCCgGGCugUucaccGCa -3'
miRNA:   3'- -GUCGGUcUGGCugCGGaCCGugGu----CG- -5'
19115 5' -60.2 NC_004684.1 + 59201 0.7 0.293104
Target:  5'- -cGCUuGAUCagcuGCGCCUGGC-CCAGCg -3'
miRNA:   3'- guCGGuCUGGc---UGCGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 9874 0.7 0.293104
Target:  5'- gGGCCaccgccucgGGAuCCGGCGCa-GGCACCuGCg -3'
miRNA:   3'- gUCGG---------UCU-GGCUGCGgaCCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 11590 0.7 0.299493
Target:  5'- cCAGCCc-GCCGguGCGCCUggacgacGGCACCgAGCu -3'
miRNA:   3'- -GUCGGucUGGC--UGCGGA-------CCGUGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 7555 0.7 0.300209
Target:  5'- -uGCUGGACCGGCcCCgggUGGCGCUGGUg -3'
miRNA:   3'- guCGGUCUGGCUGcGG---ACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 23632 0.7 0.300209
Target:  5'- cCGGCCuGACC-ACGCC-GGUACCgucAGCc -3'
miRNA:   3'- -GUCGGuCUGGcUGCGGaCCGUGG---UCG- -5'
19115 5' -60.2 NC_004684.1 + 50521 0.7 0.300209
Target:  5'- --aCCAcACCGGCGCagacaCUGGcCACCAGCa -3'
miRNA:   3'- gucGGUcUGGCUGCG-----GACC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41009 0.7 0.300209
Target:  5'- uGGCCAGAUCGcCGCCgacGuuGCCGGUg -3'
miRNA:   3'- gUCGGUCUGGCuGCGGa--CcgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 42083 0.7 0.307447
Target:  5'- -cGCCAgGGCCGAcgaaccgccgcCGCCUGGUgugGCCGGa -3'
miRNA:   3'- guCGGU-CUGGCU-----------GCGGACCG---UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 28080 0.7 0.307447
Target:  5'- uGGCCGGGCCGcCGCgCgacccGCACCGGg -3'
miRNA:   3'- gUCGGUCUGGCuGCG-Gac---CGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 22253 0.7 0.307447
Target:  5'- -cGCgCAGGCgCGAgcaugggacCGCCUGGCGgCGGCc -3'
miRNA:   3'- guCG-GUCUG-GCU---------GCGGACCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 40099 0.7 0.307447
Target:  5'- gCGGCC-GAucUCGugGCCguagcgGGCGCUGGCg -3'
miRNA:   3'- -GUCGGuCU--GGCugCGGa-----CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 22051 0.7 0.307447
Target:  5'- aCAGCCAGcGCCaGGCacaGUCUGGCuACCGGg -3'
miRNA:   3'- -GUCGGUC-UGG-CUG---CGGACCG-UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 16203 0.69 0.314818
Target:  5'- aCGGCCAGGgCG-CGCgguccaUGGC-CCGGCg -3'
miRNA:   3'- -GUCGGUCUgGCuGCGg-----ACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 19497 0.69 0.314818
Target:  5'- cCAGCCgcugcuguggugGGACgGcACGCaCUGGCucaacGCCAGCu -3'
miRNA:   3'- -GUCGG------------UCUGgC-UGCG-GACCG-----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 46542 0.69 0.314818
Target:  5'- cCGGUCGGAagaaCGACGCCggugcgcuUGGUGCCGGa -3'
miRNA:   3'- -GUCGGUCUg---GCUGCGG--------ACCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 57796 0.69 0.314818
Target:  5'- gGGCCaAGAccugggaacCCGACcacgGCCUGGUcCCGGCg -3'
miRNA:   3'- gUCGG-UCU---------GGCUG----CGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 6165 0.69 0.314818
Target:  5'- gCGGCCAgcGugCGGCGgUaGGCACCGGg -3'
miRNA:   3'- -GUCGGU--CugGCUGCgGaCCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 26400 0.69 0.314818
Target:  5'- uGGCCAacgccgccACCGGCGCgCUGGCAgCGGg -3'
miRNA:   3'- gUCGGUc-------UGGCUGCG-GACCGUgGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.