miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 12175 0.66 0.508841
Target:  5'- -cGCgCGGuGCCaACGCCUcguaGGCAuCCAGCg -3'
miRNA:   3'- guCG-GUC-UGGcUGCGGA----CCGU-GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 314 0.66 0.508841
Target:  5'- -cGCCgAGGCCaACGCCc-GCACCGGg -3'
miRNA:   3'- guCGG-UCUGGcUGCGGacCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 35692 0.66 0.505837
Target:  5'- -cGCCGGACCcggucaccaugaucGACGgugaccugaCCUGGUucaacaacACCAGCg -3'
miRNA:   3'- guCGGUCUGG--------------CUGC---------GGACCG--------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41566 0.66 0.498858
Target:  5'- uGGCC--GCCGAUGCCguucUGGCcgccacccgGCCAGUu -3'
miRNA:   3'- gUCGGucUGGCUGCGG----ACCG---------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 65097 0.66 0.498858
Target:  5'- gCGGUCAGcACCG-CGUCgUGGC-CCAGg -3'
miRNA:   3'- -GUCGGUC-UGGCuGCGG-ACCGuGGUCg -5'
19115 5' -60.2 NC_004684.1 + 1970 0.66 0.498858
Target:  5'- -cGCCAGcGCa-GCGCCUGGCGCgCGaaccGCg -3'
miRNA:   3'- guCGGUC-UGgcUGCGGACCGUG-GU----CG- -5'
19115 5' -60.2 NC_004684.1 + 55673 0.66 0.498858
Target:  5'- --cCCGGACCaACGCCcagcaGGCGUCAGCg -3'
miRNA:   3'- gucGGUCUGGcUGCGGa----CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 60586 0.66 0.497865
Target:  5'- aGGCCGacggcgucguaguGGCCGuCGuCCaGuGCACCGGCg -3'
miRNA:   3'- gUCGGU-------------CUGGCuGC-GGaC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 18350 0.66 0.497865
Target:  5'- gAGCC-GACCGGCGgCgcGGUgccgcucgacaucACCGGCa -3'
miRNA:   3'- gUCGGuCUGGCUGCgGa-CCG-------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 45200 0.66 0.497865
Target:  5'- -cGCCAGuCCGAaggcggucgccgcCGCCgUGGC-CCuGCg -3'
miRNA:   3'- guCGGUCuGGCU-------------GCGG-ACCGuGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 38244 0.66 0.49489
Target:  5'- uCGGCCAGcgcauguccccggaGCUGAuCGCCgaaauucaggccgUGGCucCCAGCg -3'
miRNA:   3'- -GUCGGUC--------------UGGCU-GCGG-------------ACCGu-GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 54229 0.66 0.492911
Target:  5'- uCGGCCAGcagcuguuccagggcACCG-CGCCgGGacagcuccucaGCCAGCg -3'
miRNA:   3'- -GUCGGUC---------------UGGCuGCGGaCCg----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15137 0.66 0.488964
Target:  5'- -cGCCAGcuucgacguACCGcCGCUgUGGCACCacGGCc -3'
miRNA:   3'- guCGGUC---------UGGCuGCGG-ACCGUGG--UCG- -5'
19115 5' -60.2 NC_004684.1 + 6788 0.66 0.488964
Target:  5'- -cGCCGgguGACCG--GCCUGcGCACCGuGCg -3'
miRNA:   3'- guCGGU---CUGGCugCGGAC-CGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 54095 0.66 0.488964
Target:  5'- aCAGCUgcuCCGACGgC-GcGCACCAGCc -3'
miRNA:   3'- -GUCGGucuGGCUGCgGaC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 6656 0.66 0.488964
Target:  5'- gCGGCCAc-CCGGuCGCCgGGCACCu-- -3'
miRNA:   3'- -GUCGGUcuGGCU-GCGGaCCGUGGucg -5'
19115 5' -60.2 NC_004684.1 + 33091 0.66 0.488964
Target:  5'- cCGGCguGgcgcuGCCGACGCa-GGCGCUcGCg -3'
miRNA:   3'- -GUCGguC-----UGGCUGCGgaCCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 57719 0.66 0.488964
Target:  5'- uGGCCaaGGACUGguggcACGCCcaGGCGgCAGCu -3'
miRNA:   3'- gUCGG--UCUGGC-----UGCGGa-CCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 43134 0.66 0.488964
Target:  5'- uGGCgAG-CUGGCGCaccucuuccUUGGCACCgAGCa -3'
miRNA:   3'- gUCGgUCuGGCUGCG---------GACCGUGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 26815 0.66 0.487979
Target:  5'- gGGCCGGuugaugaacgacACCaGCGCgCUGGUggaccggucgagcACCAGCg -3'
miRNA:   3'- gUCGGUC------------UGGcUGCG-GACCG-------------UGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.