miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 45118 0.66 0.469458
Target:  5'- gGGCCuuGGCCGcCGCCaGGCGgucCCAuGCu -3'
miRNA:   3'- gUCGGu-CUGGCuGCGGaCCGU---GGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 34285 0.66 0.469458
Target:  5'- uGGCCAG-CgCGAgCGCCUGcGuCGgCAGCg -3'
miRNA:   3'- gUCGGUCuG-GCU-GCGGAC-C-GUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 57570 0.66 0.469458
Target:  5'- aCGGCaAGACgGugGCCUugagcgucgGGUgccACCGGCg -3'
miRNA:   3'- -GUCGgUCUGgCugCGGA---------CCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 36519 0.66 0.469458
Target:  5'- gAGCCuGGGCaCGGCGUUcGGgAUCAGCg -3'
miRNA:   3'- gUCGG-UCUG-GCUGCGGaCCgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 9793 0.66 0.469458
Target:  5'- -cGCCgAGGCCcuGCGCCggUGGCACCcgacGCu -3'
miRNA:   3'- guCGG-UCUGGc-UGCGG--ACCGUGGu---CG- -5'
19115 5' -60.2 NC_004684.1 + 64371 0.66 0.469458
Target:  5'- gCGGUCAGcuCCauGugGUCcGGCAUCAGCa -3'
miRNA:   3'- -GUCGGUCu-GG--CugCGGaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 42868 0.66 0.468493
Target:  5'- cCAaCCAGGCCGccgcACGCCcggccucUGGCACCGa- -3'
miRNA:   3'- -GUcGGUCUGGC----UGCGG-------ACCGUGGUcg -5'
19115 5' -60.2 NC_004684.1 + 30645 0.66 0.468493
Target:  5'- gGGCCAGAacggcauCCGGCuCCaGGUGCgGGCa -3'
miRNA:   3'- gUCGGUCU-------GGCUGcGGaCCGUGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 26049 0.67 0.462725
Target:  5'- gCGGCCAGGgCGGCGaguucgaggccaacaCCUcGGCGuacgacuCCAGCg -3'
miRNA:   3'- -GUCGGUCUgGCUGC---------------GGA-CCGU-------GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 65959 0.67 0.459856
Target:  5'- cCAGCUcGGCCugGAC-CUUGGC-CCGGCa -3'
miRNA:   3'- -GUCGGuCUGG--CUGcGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 62913 0.67 0.459856
Target:  5'- gGGCCAGGCCcugGCC-GGUgacgaagccgACCAGCg -3'
miRNA:   3'- gUCGGUCUGGcugCGGaCCG----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61592 0.67 0.459856
Target:  5'- gCGGCaCGucccGACCucgcACGCCUGGCGCagUAGCg -3'
miRNA:   3'- -GUCG-GU----CUGGc---UGCGGACCGUG--GUCG- -5'
19115 5' -60.2 NC_004684.1 + 53411 0.67 0.459856
Target:  5'- uGGCCGGGCUG--GCCU-GCGCCGcGCg -3'
miRNA:   3'- gUCGGUCUGGCugCGGAcCGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 55331 0.67 0.459856
Target:  5'- -cGCCGacGGCUGGCaggugaGCCUGGCGCgCAuGCa -3'
miRNA:   3'- guCGGU--CUGGCUG------CGGACCGUG-GU-CG- -5'
19115 5' -60.2 NC_004684.1 + 20295 0.67 0.459856
Target:  5'- cCAGCgAGaagugcGCCGACaCCaUGGCGgCGGCg -3'
miRNA:   3'- -GUCGgUC------UGGCUGcGG-ACCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 3821 0.67 0.459856
Target:  5'- -cGCgCAGGCCGAUGgaCCugaUGGCAgCGGCc -3'
miRNA:   3'- guCG-GUCUGGCUGC--GG---ACCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 8322 0.67 0.459856
Target:  5'- gAGCUAcuGGCUGAC-CCUGGCcCUGGCc -3'
miRNA:   3'- gUCGGU--CUGGCUGcGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 44863 0.67 0.459856
Target:  5'- cCGGgCAGAgCGAgGCCUGccuGCGUCAGCu -3'
miRNA:   3'- -GUCgGUCUgGCUgCGGAC---CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 59757 0.67 0.459856
Target:  5'- gAGCguGACCcagaugcuGACGCaccacgGGCACCGGa -3'
miRNA:   3'- gUCGguCUGG--------CUGCGga----CCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 25167 0.67 0.458901
Target:  5'- -cGCCGGugccgacACCGGCgGCCacgucGGCcACCAGCu -3'
miRNA:   3'- guCGGUC-------UGGCUG-CGGa----CCG-UGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.